PGSC0003DMG400024254 (Solanum tuberosum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 PGSC0003DMG400024254 T344268_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.965 0.718
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.965 0.718
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.965 0.709
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.963 0.738
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.963 0.738
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.963 0.738
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.963 0.718
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.963 0.718
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.962 0.650
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.961 0.738
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.955 0.583
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.955 0.592
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.955 0.544
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.955 0.544
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.955 0.544
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.955 0.544
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.955 0.544
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.954 0.583
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.954 0.583
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.954 0.583
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.954 0.583
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.951 0.573
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.948 0.563
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.948 0.544
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.940 0.553
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.937 0.553
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.937 0.553
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.936 0.573
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.924 0.524
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.924 0.524
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.922 0.505
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.920 0.495
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.919 0.485
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.889 0.447
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.889 0.447
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400062327 TCP 91 203

Links

Other TCP family TFs
Other Solanum tuberosum TFs

647 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009185 Calypte anna Aan_R009185 I 0.000
Afo_R007523 Aptenodytes forsteri Afo_R007523 I 0.000
Alligator_sinensis_CCG009047.1 Alligator sinensis Alligator_sinensis_CCG009047.1 I 0.000
Brh_R003401 Buceros rhinoceros Brh_R003401 I 0.000
Cmyd_10016754 Chelonia mydas Cmyd_10016754 I 0.000
ENSAMEG00000001273 Ailuropoda melanoleuca ENSAMEG00000001273 I 0.000
ENSAMXG00000015046 Astyanax mexicanus ENSAMXG00000015046 I 0.000
ENSAPLG00000006256 Anas platyrhynchos ENSAPLG00000006256 I 0.000
ENSCSAG00000002787 Chlorocebus sabaeus ENSCSAG00000002787 I 0.000
ENSDORG00000012257 Dipodomys ordii ENSDORG00000012257 I 0.000
ENSEEUG00000012574 Erinaceus europaeus ENSEEUG00000012574 I 0.000
ENSETEG00000007978 Echinops telfairi ENSETEG00000007978 I 0.000
ENSFALG00000003070 Ficedula albicollis ENSFALG00000003070 I 0.000
ENSGMOG00000003784 Gadus morhua ENSGMOG00000003784 I 0.000
ENSLOCG00000002928 Lepisosteus oculatus ENSLOCG00000002928 I 0.000
ENSMEUG00000001901 Macropus eugenii ENSMEUG00000001901 I 0.000
ENSMMUP00000003371 Macaca fascicularis ENSMMUP00000003371 I 0.000
ENSMPUG00000007237 Mustela putorius furo ENSMPUG00000007237 I 0.000
ENSNLEG00000015731 Nomascus leucogenys ENSNLEG00000015731 I 0.000
ENSOARG00000014354 Ovis aries ENSOARG00000014354 I 0.000
ENSONIG00000010959 Oreochromis niloticus ENSONIG00000010959 I 0.000
ENSP00000415836-D1 Bos grunniens ENSP00000415836-D1 I 0.000
ENSPANG00000022228 Papio anubis ENSPANG00000022228 I 0.000
ENSPFOG00000011742 Poecilia formosa ENSPFOG00000011742 I 0.000
ENSPPYG00000007673 Pongo abelii ENSPPYG00000007673 I 0.000
ENSPSIG00000009997 Pelodiscus sinensis ENSPSIG00000009997 I 0.000
ENSSHAG00000006045 Sarcophilus harrisii ENSSHAG00000006045 I 0.000
ENSSTOG00000013982 Ictidomys tridecemlineatus ENSSTOG00000013982 I 0.000
ENSXMAG00000002903 Xiphophorus maculatus ENSXMAG00000002903 I 0.000
Gfo_R000535 Geospiza fortis Gfo_R000535 I 0.000
Myotis_brandtii_ZNF276_10003797 Myotis brandtii Myotis_brandtii_ZNF276_10003797 I 0.000
Ogr16798 Ophisaurus gracilis Ogr16798 I 0.000
Pvit_16300 Pogona vitticeps Pvit_16300 I 0.000
Zfp276 Mus musculus ENSMUSG00000001065 I 0.000
Zfp276 Rattus norvegicus ENSRNOG00000016631 I 0.000
ZNF276 Oryctolagus cuniculus ENSOCUG00000008960 I 0.000
ZNF276 Sus scrofa ENSSSCG00000029228 I 0.000
ZNF276 Taeniopygia guttata ENSTGUG00000007961 I 0.000
ZNF276 Sorex araneus ENSSARG00000003731 I 0.000
ZNF276 Tetraodon nigroviridis ENSTNIG00000008839 I 0.000
ZNF276 Pan troglodytes ENSPTRG00000008487 I 0.000
ZNF276 Takifugu rubripes ENSTRUG00000005087 I 0.000
ZNF276 Tursiops truncatus ENSTTRG00000004416 I 0.000
znf276 Xenopus tropicalis XB-GENE-983669 I 0.000
ZNF276 Oryzias latipes ENSORLG00000015289 I 0.000
ZNF276 Bos taurus ENSBTAG00000001904 I 0.000
ZNF276 Canis familiaris ENSCAFG00000019816 I 0.000
ZNF276 Callithrix jacchus ENSCJAG00000010721 I 0.000
ZNF276 Cavia porcellus ENSCPOG00000002334 I 0.000
ZNF276 Dasypus novemcinctus ENSDNOG00000001856 I 0.000
ZNF276 Equus caballus ENSECAG00000019563 I 0.000
ZNF276 Felis catus ENSFCAG00000003794 I 0.000
ZNF276 Homo sapiens ENSG00000158805 D 0.000
ZNF276 Gasterosteus aculeatus ENSGACG00000002104 I 0.000
ZNF276 Gallus gallus ENSGALG00000000513 I 0.000
ZNF276 Gorilla gorilla ENSGGOG00000010960 I 0.000
ZNF276 Loxodonta africana ENSLAFG00000018198 I 0.000
ZNF276 Meleagris gallopavo ENSMGAG00000008195 I 0.000
ZNF276 Microcebus murinus ENSMICG00000003291 I 0.000
ZNF276 Myotis lucifugus ENSMLUG00000013641 I 0.000
ZNF276 Macaca mulatta ENSMMUG00000002506 I 0.000
ZNF276 Monodelphis domestica ENSMODG00000003479 I 0.000
ZNF276 Ornithorhynchus anatinus ENSOANG00000004837 I 0.000
ZNF276 Anolis carolinensis ENSACAG00000008103 I 0.000
ZNF276 Otolemur garnettii ENSOGAG00000004891 I 0.000
ZNF276 Ochotona princeps ENSOPRG00000016172 I 0.000
ZNF276 Procavia capensis ENSPCAG00000001610 I 0.000
znf276.S Xenopus laevis XB-GENE-983672 I 0.000