CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

POPTR_0001s08590 *(Populus trichocarpa)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	POPTR_0001s08590	T344279_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.971	0.845
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.964	0.845
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.964	0.845
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.963	0.810
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.962	0.869
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.962	0.869
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.962	0.869
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.962	0.881
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.958	0.750
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.957	0.631
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.957	0.631
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.957	0.631
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.957	0.631
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.955	0.631
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.948	0.810
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.942	0.679
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.942	0.679
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.942	0.679
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.942	0.679
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.941	0.667
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.940	0.643
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.939	0.643
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.937	0.643
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.932	0.619
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.932	0.643
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.923	0.631
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.923	0.631
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.916	0.607
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.904	0.571
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.903	0.560
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.901	0.583
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.901	0.583
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.899	0.571
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.850	0.512
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.850	0.512
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
POPTR_0001s08590.1	TCP	108	237	ASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEEAIIEATGTGTVPAIAVSVGGTLKIPTTTSNNSNSLTETPKKRKRPSNSEFCDISEAAPVSTSQTSGLAPVKPSAPLAA

Links
Other TCP family TFs
Other *Populus trichocarpa* TFs

654 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AAEL017280	Aedes aegypti	AAEL017280	N	0.000
ACEP26642	Atta cephalotes	ACEP26642	N	0.000
AFAF010393	Anopheles farauti	AFAF010393	N	0.000
AFUN009891	Anopheles funestus	AFUN009891	N	0.000
AMEM013442	Anopheles merus	AMEM013442	N	0.000
ANCCAN_09492	Ancylostoma caninum	ANCCAN_09492	N	0.000
ANCCEY_03110	Ancylostoma ceylanicum	ANCCEY_03110	N	0.000
ANCDUO_04788	Ancylostoma duodenale	ANCDUO_04788	N	0.000
ASTEI11512	Anopheles stephensi	ASTEI11512	N	0.000
augustus_masked-nMf.1.1.scaf10960-processed-gene-0.0	Meloidogyne floridensis	augustus_masked-nMf.1.1.scaf10960-processed-gene-0.0	I	0.000
BGIBMGA010273	Bombyx mori	BGIBMGA010273	N	0.000
Bm1891	Brugia malayi	Bm1891	N	0.000
BTMF_0001195401	Brugia timori	BTMF_0001195401	N	0.000
BXY_0663500	Bursaphelenchus xylophilus	BXY_0663500	N	0.000
CBG12337	Caenorhabditis briggsae	CBG12337	N	0.000
CBN07938	Caenorhabditis brenneri	CBN07938	N	0.000
Cflo_01219--XP_395512.3_APIME	Camponotus floridanus	Cflo_01219--XP_395512.3_APIME	N	0.000
CJA11729	Caenorhabditis japonica	CJA11729	N	0.000
CLEC012210	Cimex lectularius	CLEC012210	N	0.000
CRE29533	Caenorhabditis remanei	CRE29533	N	0.000
DAPPUDRAFT_327651	Daphnia pulex	DAPPUDRAFT_327651	N	0.000
DME_0001005001	Dracunculus medinensis	DME_0001005001	N	0.000
EEL_0001008901	Elaeophora elaphi	EEL_0001008901	N	0.000
EVEC_0000024601	Enterobius vermicularis	EVEC_0000024601	N	0.000
GA26236	Drosophila pseudoobscura	FBgn0247610	N	0.000
GB44899	Apis mellifera	GB44899	N	0.000
GF23141	Drosophila ananassae	FBgn0100135	N	0.000
GG16758	Drosophila erecta	FBgn0108988	N	0.000
GH15872	Drosophila grimshawi	FBgn0123343	N	0.000
GI23637	Drosophila mojavensis	FBgn0146363	N	0.000
GJ24712	Drosophila virilis	FBgn0211788	N	0.000
GK22507	Drosophila willistoni	FBgn0224484	N	0.000
GM15347	Drosophila sechellia	FBgn0170267	N	0.000
GPLIN_000077900	Globodera pallida	GPLIN_000077900	N	0.000
GPUH_0000112301	Gongylonema pulchrum	GPUH_0000112301	N	0.000
HCOI00324200	Haemonchus contortus	HCOI00324200	N	0.000
HCOI00647600	Haemonchus contortus	HCOI00647600	N	0.000
HHAL005964-PA	Halyomorpha halys	HHAL005964-PA	N	0.000
HPLM_0000291901	Haemonchus placei	HPLM_0000291901	N	0.000
Hsal_01939--XP_395512.3_APIME	Harpegnathos saltator	Hsal_01939--XP_395512.3_APIME	N	0.000
ISCW014189	Ixodes scapularis	ISCW014189	I	0.000
KGM_12579	Danaus plexippus	KGM_12579	N	0.000
L596_g4117	Steinernema carpocapsae	L596_g4117	N	0.000
L889_g180	Steinernema feltiae	L889_g180	N	0.000
L892_g19705	Steinernema scapterisci	L892_g19705	N	0.000
L893_g29191	Steinernema glaseri	L893_g29191	N	0.000
L898_g16017	Steinernema monticolum	L898_g16017	N	0.000
L898_g7337	Steinernema monticolum	L898_g7337	N	0.000
LCUP015823	Lucilia cuprina	LCUP015823	N	0.000
LDEC011073	Leptinotarsa decemlineata	LDEC011073	I	0.000
let-526	Caenorhabditis elegans	WBGene00002717	N	0.000
LOAG_17326	Loa loa	LOAG_17326	N	0.000
MhA1_Contig163.frz3.gene26	Meloidogyne hapla	MhA1_Contig163.frz3.gene26	I	0.000
nAv.1.0.1.g00338	Acanthocheilonema viteae	nAv.1.0.1.g00338	N	0.000
NBR_0002081701	Nippostrongylus brasiliensis	NBR_0002081701	N	0.000
nDi.2.2.2.g04479	Dirofilaria immitis	nDi.2.2.2.g04479	N	0.000
NECAME_01002	Necator americanus	NECAME_01002	N	0.000
nLs.2.1.2.g09434	Litomosoides sigmodontis	nLs.2.1.2.g09434	N	0.000
nOo.2.0.1.g08403	Onchocerca ochengi	nOo.2.0.1.g08403	N	0.000
OESDEN_04600	Oesophagostomum dentatum	OESDEN_04600	N	0.000
OFLC_0001383401	Onchocerca flexuosa	OFLC_0001383401	N	0.000
osa	Drosophila melanogaster	FBgn0261885	N	0.000
osa	Drosophila yakuba	FBgn0041640	N	0.000
PEQ_0000742201	Parascaris equorum	PEQ_0000742201	N	0.000
PHUM080380	Pediculus humanus	PHUM080380	N	0.000
PPA05721	Pristionchus pacificus	PPA05721	N	0.000
PPAI002183	Phlebotomus papatasi	PPAI002183	N	0.000
PTRK_0001699800	Parastrongyloides trichosuri	PTRK_0001699800	N	0.000
RSKR_0000271300	Rhabditophanes kr3021	RSKR_0000271300	N	0.000
SBAD_0000668001	Soboliphyme baturini	SBAD_0000668001	N	0.000
scaffold2015-EXSNAP2012.2	Pristionchus exspectatus	scaffold2015-EXSNAP2012.2	N	0.000
SINV22763	Solenopsis invicta	SINV22763	N	0.000
SMAR003184	Strigamia maritima	SMAR003184	I	0.000
SMAR006121	Strigamia maritima	SMAR006121	I	0.000
SMU15038692	Schmidtea mediterranea	SMU15038692	N	0.000
SPAL_0001124500	Strongyloides papillosus	SPAL_0001124500	N	0.000
SSTP_0000977600	Strongyloides stercoralis	SSTP_0000977600	N	0.000
SVE_1830100	Strongyloides venezuelensis	SVE_1830100	N	0.000
TC013586	Tribolium castaneum	TC013586	N	0.000
TCLT_0000619901	Thelazia callipaeda	TCLT_0000619901	N	0.000
TCNE_0000128301	Toxocara canis	TCNE_0000128301	N	0.000
TELCIR_03263	Teladorsagia circumcincta	TELCIR_03263	N	0.000
WBGene00237224	Onchocerca volvulus	WBGene00237224	N	0.000
WUBG_00477	Wuchereria bancrofti	WUBG_00477	N	0.000
YQE_09239	Dendroctonus ponderosae	YQE_09239	N	0.000

POPTR_0001s08590 (Populus trichocarpa) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

654 Related TFs

POPTR_0001s08590 **(Populus trichocarpa)
TCP**