30131.m007038 (Ricinus communis)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 30131.m007038 T344585_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.975 0.780
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.971 0.688
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.970 0.670
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.967 0.624
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.967 0.624
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.967 0.624
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.967 0.624
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.966 0.679
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.962 0.651
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.962 0.651
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.962 0.651
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.962 0.651
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.961 0.569
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.960 0.569
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.958 0.606
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.958 0.606
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.956 0.560
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.956 0.550
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.956 0.550
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.956 0.550
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.953 0.587
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.953 0.569
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.949 0.523
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.949 0.587
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.948 0.541
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.943 0.560
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.943 0.560
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.942 0.569
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.941 0.560
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.934 0.541
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.934 0.541
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.928 0.477
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.927 0.486
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.897 0.514
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.897 0.514
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30131.m007038 TCP 77 319

Links

Other TCP family TFs
Other Ricinus communis TFs

655 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28211.m000132 Ricinus communis 28211.m000132 I 0.000
29983.m003158 Ricinus communis 29983.m003158 I 0.000
30174.m008805 Ricinus communis 30174.m008805 I 0.000
30190.m011329 Ricinus communis 30190.m011329 I 0.000
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I 0.000
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I 0.000
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I 0.000
BGIOSGA016888 Oryza indica BGIOSGA016888 I 0.000
BGIOSGA024253 Oryza indica BGIOSGA024253 I 0.000
Bo2g062840 Brassica oleracea Bo2g062840 I 0.000
Bo3g027460 Brassica oleracea Bo3g027460 I 0.000
Bo4g042390 Brassica oleracea Bo4g042390 I 0.000
Bo6g120690 Brassica oleracea Bo6g120690 I 0.000
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I 0.000
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I 0.000
Bostr.7128s0689 Boechera stricta Bostr.7128s0689 I 0.000
Bra005470 Brassica rapa Bra005470 I 0.000
Bra015732 Brassica rapa Bra015732 I 0.000
Bra021880 Brassica rapa Bra021880 I 0.000
Bra022954 Brassica rapa Bra022954 I 0.000
Bra025863 Brassica rapa Bra025863 I 0.000
Bra038101 Brassica rapa Bra038101 I 0.000
Bra038324 Brassica rapa Bra038324 I 0.000
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I 0.000
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I 0.000
Cagra.0537s0003 Capsella grandiflora Cagra.0537s0003 I 0.000
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I 0.000
Carubv10008169m.g Capsella rubella Carubv10008169m.g I 0.000
Carubv10012577m.g Capsella rubella Carubv10012577m.g I 0.000
Carubv10014636m.g Capsella rubella Carubv10014636m.g I 0.000
Carubv10020369m.g Capsella rubella Carubv10020369m.g I 0.000
Carubv10024311m.g Capsella rubella Carubv10024311m.g I 0.000
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I 0.000
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I 0.000
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I 0.000
cassava46941.m1 Manihot esculenta cassava46941.m1 I 0.000
Ca_00320 Cicer arietinum Ca_00320 I 0.000
Ca_10879 Cicer arietinum Ca_10879 I 0.000
Ca_16243 Cicer arietinum Ca_16243 I 0.000
Ca_24655 Cicer arietinum Ca_24655 I 0.000
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I 0.000
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I 0.000
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I 0.000
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I 0.000
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I 0.000
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I 0.000
Ciclev10020532m.g Citrus clementina Ciclev10020532m.g I 0.000
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I 0.000
Cla002263 Citrullus lanatus Cla002263 I 0.000
Cla009788 Citrullus lanatus Cla009788 I 0.000
Cla020006 Citrullus lanatus Cla020006 I 0.000
Cla021411 Citrullus lanatus Cla021411 I 0.000
Cla023735 Citrullus lanatus Cla023735 I 0.000
Cucsa.046310 Cucumis sativus Cucsa.046310 N 0.000
Cucsa.196000 Cucumis sativus Cucsa.196000 I 0.000
Cucsa.259800 Cucumis sativus Cucsa.259800 I 0.000
Cucsa.272530 Cucumis sativus Cucsa.272530 I 0.000
Eucgr.D02505 Eucalyptus grandis Eucgr.D02505 I 0.000
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I 0.000
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I 0.000
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I 0.000
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I 0.000
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I 0.000
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I 0.000
F775_02791 Aegilops tauschii F775_02791 I 0.000
fgenesh1_pg.C_scaffold_2001253 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001253 I 0.000
gene00196-v1.0-hybrid Fragaria vesca gene00196-v1.0-hybrid I 0.000
gene04565-v1.0-hybrid Fragaria vesca gene04565-v1.0-hybrid I 0.000
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I 0.000
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I 0.000
GLYMA01G08056 Glycine max GLYMA01G08056 I 0.000
GLYMA02G13371 Glycine max GLYMA02G13371 I 0.000
GLYMA03G27195 Glycine max GLYMA03G27195 I 0.000
GLYMA06G36140 Glycine max GLYMA06G36140 I 0.000
GLYMA07G14641 Glycine max GLYMA07G14641 I 0.000
GLYMA07G31880 Glycine max GLYMA07G31880 N 0.000
GLYMA11G08905 Glycine max GLYMA11G08905 N 0.000
GLYMA11G16556 Glycine max GLYMA11G16556 I 0.000
GLYMA12G27330 Glycine max GLYMA12G27330 I 0.000
GLYMA13G24590 Glycine max GLYMA13G24590 N 0.000
GLYMA13G31090 Glycine max GLYMA13G31090 I 0.000
GLYMA13G37130 Glycine max GLYMA13G37130 N 0.000
GLYMA15G08270 Glycine max GLYMA15G08270 I 0.000
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I 0.000
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I 0.000
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I 0.000
Gorai.008G107300 Gossypium raimondii Gorai.008G107300 I 0.000
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I 0.000
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I 0.000
GRMZM2G148467 Zea mays GRMZM2G148467 I 0.000
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I 0.000
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I 0.000
GSMUA_Achr4G23650_001 Musa acuminata GSMUA_Achr4G23650_001 I 0.000
GSMUA_Achr4G26940_001 Musa acuminata GSMUA_Achr4G26940_001 I 0.000
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I 0.000
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I 0.000
LjSGA_061446.1 Lotus japonicus LjSGA_061446.1 I 0.000
LPERR04G17030 Leersia perrieri LPERR04G17030 I 0.000
Lus10000643.g Linum usitatissimum Lus10000643.g I 0.000
Lus10005548.g Linum usitatissimum Lus10005548.g I 0.000
Lus10013999.g Linum usitatissimum Lus10013999.g I 0.000
Lus10015421.g Linum usitatissimum Lus10015421.g I 0.000
Lus10018610.g Linum usitatissimum Lus10018610.g I 0.000
Lus10036812.g Linum usitatissimum Lus10036812.g I 0.000
MDP0000156994 Malus domestica MDP0000156994 I 0.000
MDP0000158607 Malus domestica MDP0000158607 I 0.000
MDP0000171877 Malus domestica MDP0000171877 I 0.000
MDP0000246046 Malus domestica MDP0000246046 I 0.000
MDP0000589558 Malus domestica MDP0000589558 I 0.000
MDP0000861601 Malus domestica MDP0000861601 I 0.000
MDP0000865739 Malus domestica MDP0000865739 I 0.000
mgf011616m Mimulus guttatus mgf011616m I 0.000
mgf016414m Mimulus guttatus mgf016414m I 0.000
mgf017351m Mimulus guttatus mgf017351m I 0.000
MLOC_13032 Hordeum vulgare MLOC_13032 I 0.000
MLOC_69667 Hordeum vulgare MLOC_69667 I 0.000
MTR_2g014200 Medicago truncatula MTR_2g014200 I 0.000
MTR_4g088555 Medicago truncatula MTR_4g088555 I 0.000
MTR_7g028740 Medicago truncatula MTR_7g028740 I 0.000
MTR_7g444860 Medicago truncatula MTR_7g444860 I 0.000
MTR_8g463140 Medicago truncatula MTR_8g463140 I 0.000
OB04G27960 Oryza brachyantha OB04G27960 I 0.000
OBART04G20940 Oryza barthii OBART04G20940 I 0.000
OBART07G15570 Oryza barthii OBART07G15570 I 0.000
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I 0.000
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I 0.000
OMERI04G17360 Oryza meridionalis OMERI04G17360 I 0.000
OMERI07G12270 Oryza meridionalis OMERI07G12270 I 0.000
ONIVA04G19190 Oryza nivara ONIVA04G19190 I 0.000
ONIVA07G14170 Oryza nivara ONIVA07G14170 I 0.000
OPUNC04G18620 Oryza punctata OPUNC04G18620 I 0.000
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I 0.000
orange1.1g017256m.g Citrus sinensis orange1.1g017256m.g I 0.000
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I 0.000
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I 0.000
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I 0.000
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I 0.000
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I 0.000
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I 0.000
Pavir.Ab00520 Panicum virgatum Pavir.Ab00520 I 0.000
Pavir.Ga01083 Panicum virgatum Pavir.Ga01083 I 0.000
Pavir.Gb01121 Panicum virgatum Pavir.Gb01121 I 0.000
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I 0.000
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I 0.000
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I 0.000
PK22320.1 Cannabis sativa PK22320.1 D 0.000
PK26639.1 Cannabis sativa PK26639.1 I 0.000
Pm010075 Prunus mume Pm010075 I 0.000
Pm011381 Prunus mume Pm011381 I 0.000
Pm014154 Prunus mume Pm014154 I 0.000
Pm030597 Prunus mume Pm030597 I 0.000
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I 0.000
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I 0.000
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I 0.000
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I 0.000
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I 0.000
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I 0.000
PRUPE_ppa017695mg Prunus persica PRUPE_ppa017695mg I 0.000
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I 0.000
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I 0.000
SapurV1A.0032s0360 Salix purpurea SapurV1A.0032s0360 I 0.000
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I 0.000
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I 0.000
SapurV1A.0176s0470 Salix purpurea SapurV1A.0176s0470 I 0.000
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I 0.000
Si010262m.g Setaria italica Si010262m.g I 0.000
Si032170m.g Setaria italica Si032170m.g I 0.000
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I 0.000
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I 0.000
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I 0.000
SPL14 Arabidopsis thaliana AT1G20980 D 0.000
SPL14 Arabidopsis lyrata fgenesh2_kg.1__2292__AT1G20980.1 I 0.000
SPL3 Arabidopsis thaliana AT2G33810 D 0.000
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I 0.000
SPL3 Vitis vinifera VIT_10s0003g00050 I 0.000
SPL4 Arabidopsis thaliana AT1G53160 D 0.000
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I 0.000
SPL5 Arabidopsis thaliana AT3G15270 D 0.000
SPL6 Arabidopsis thaliana AT1G69170 I 0.000
SPL7 Oryza sativa OS04G0551500 I 0.000
TCM_005620 Theobroma cacao TCM_005620 I 0.000
TCM_008150 Theobroma cacao TCM_008150 I 0.000
TCM_029832 Theobroma cacao TCM_029832 I 0.000
TCM_031595 Theobroma cacao TCM_031595 I 0.000
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I 0.000
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I 0.000
Thhalv10018638m.g Eutrema salsugineum Thhalv10018638m.g I 0.000
Traes_2AL_B45245746 Triticum aestivum Traes_2AL_B45245746 I 0.000
Traes_2AS_C2A4AFE6F Triticum aestivum Traes_2AS_C2A4AFE6F I 0.000
Traes_2BL_69E6AB6D1 Triticum aestivum Traes_2BL_69E6AB6D1 I 0.000
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I 0.000
TRIUR3_23102 Triticum urartu TRIUR3_23102 I 0.000
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I 0.000
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I 0.000
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I 0.000