Bostr.0556s0373 (Boechera stricta)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Bostr.0556s0373 T344700_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.974 0.681
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.972 0.672
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.971 0.613
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.971 0.613
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.971 0.613
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.971 0.613
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.969 0.597
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.963 0.588
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.957 0.496
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.957 0.529
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.957 0.529
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.957 0.529
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.957 0.529
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.957 0.496
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.956 0.479
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.956 0.479
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.956 0.479
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.955 0.504
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.955 0.504
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.952 0.471
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.952 0.504
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.951 0.521
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.950 0.496
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.944 0.454
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.944 0.454
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.940 0.479
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.939 0.487
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.939 0.479
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.939 0.479
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.935 0.496
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.934 0.504
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.934 0.504
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.931 0.479
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.885 0.429
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.885 0.429
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.0556s0373.1.p TCP 77 325

Links

Other TCP family TFs
Other Boechera stricta TFs

655 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29915.m000469 Ricinus communis 29915.m000469 N 0.000
29917.m001969 Ricinus communis 29917.m001969 N 0.000
29976.m000497 Ricinus communis 29976.m000497 N 0.000
AMTR_s00003p00266720 Amborella trichopoda AMTR_s00003p00266720 N 0.000
Aquca_008_00005 Aquilegia coerulea Aquca_008_00005 N 0.000
Aquca_045_00208 Aquilegia coerulea Aquca_045_00208 N 0.000
Aquca_063_00016 Aquilegia coerulea Aquca_063_00016 N 0.000
BGIOSGA023709 Oryza indica BGIOSGA023709 N 0.000
BGIOSGA025947 Oryza indica BGIOSGA025947 N 0.000
Bo1g024250 Brassica oleracea Bo1g024250 N 0.000
Bo3g024640 Brassica oleracea Bo3g024640 N 0.000
Bo4g058460 Brassica oleracea Bo4g058460 N 0.000
Bo4g173060 Brassica oleracea Bo4g173060 N 0.000
Bo7g115560 Brassica oleracea Bo7g115560 N 0.000
Bo7g115570 Brassica oleracea Bo7g115570 N 0.000
Bostr.10689s0100 Boechera stricta Bostr.10689s0100 N 0.000
Bostr.24513s0191 Boechera stricta Bostr.24513s0191 N 0.000
Bostr.7867s1055 Boechera stricta Bostr.7867s1055 N 0.000
Bra013535 Brassica rapa Bra013535 N 0.000
Bra018313 Brassica rapa Bra018313 N 0.000
Bra021635 Brassica rapa Bra021635 N 0.000
Bra022801 Brassica rapa Bra022801 N 0.000
Bra023968 Brassica rapa Bra023968 N 0.000
BRADI1G24720 Brachypodium distachyon BRADI1G24720 N 0.000
Cagra.0567s0011 Capsella grandiflora Cagra.0567s0011 N 0.000
Cagra.12385s0007 Capsella grandiflora Cagra.12385s0007 N 0.000
Cagra.3519s0007 Capsella grandiflora Cagra.3519s0007 N 0.000
Carubv10004192m.g Capsella rubella Carubv10004192m.g N 0.000
Carubv10004194m.g Capsella rubella Carubv10004194m.g N 0.000
Carubv10022654m.g Capsella rubella Carubv10022654m.g N 0.000
cassava13133.valid.m1 Manihot esculenta cassava13133.valid.m1 N 0.000
cassava25238.valid.m1 Manihot esculenta cassava25238.valid.m1 N 0.000
cassava39646.m1 Manihot esculenta cassava39646.m1 N 0.000
cassava41301.m1 Manihot esculenta cassava41301.m1 N 0.000
Ca_00244 Cicer arietinum Ca_00244 N 0.000
Ca_08924 Cicer arietinum Ca_08924 N 0.000
Ca_15659 Cicer arietinum Ca_15659 N 0.000
Ca_23185 Cicer arietinum Ca_23185 N 0.000
Ciclev10000225m.g Citrus clementina Ciclev10000225m.g N 0.000
Ciclev10011039m.g Citrus clementina Ciclev10011039m.g N 0.000
Ciclev10014219m.g Citrus clementina Ciclev10014219m.g N 0.000
Cla008225 Citrullus lanatus Cla008225 N 0.000
Cla018330 Citrullus lanatus Cla018330 N 0.000
Cucsa.045980 Cucumis sativus Cucsa.045980 N 0.000
Cucsa.111990 Cucumis sativus Cucsa.111990 N 0.000
Cucsa.177010 Cucumis sativus Cucsa.177010 N 0.000
Eucgr.B04027 Eucalyptus grandis Eucgr.B04027 N 0.000
Eucgr.E03465 Eucalyptus grandis Eucgr.E03465 N 0.000
Eucgr.E03467 Eucalyptus grandis Eucgr.E03467 N 0.000
Eucgr.F02704 Eucalyptus grandis Eucgr.F02704 N 0.000
Eucgr.L01473 Eucalyptus grandis Eucgr.L01473 N 0.000
evm.TU.supercontig_0.91 Carica papaya evm.TU.supercontig_0.91 N 0.000
evm.TU.supercontig_2.296 Carica papaya evm.TU.supercontig_2.296 N 0.000
F775_30051 Aegilops tauschii F775_30051 N 0.000
F775_32613 Aegilops tauschii F775_32613 N 0.000
gene13877-v1.0-hybrid Fragaria vesca gene13877-v1.0-hybrid N 0.000
gene28098-v1.0-hybrid Fragaria vesca gene28098-v1.0-hybrid N 0.000
gene30690-v1.0-hybrid Fragaria vesca gene30690-v1.0-hybrid N 0.000
GLYMA01G32810 Glycine max GLYMA01G32810 N 0.000
GLYMA02G40280 Glycine max GLYMA02G40280 N 0.000
GLYMA03G04330 Glycine max GLYMA03G04330 N 0.000
GLYMA11G31234 Glycine max GLYMA11G31234 N 0.000
GLYMA13G31970 Glycine max GLYMA13G31970 N 0.000
GLYMA14G38492 Glycine max GLYMA14G38492 N 0.000
GLYMA15G07350 Glycine max GLYMA15G07350 N 0.000
GLYMA18G05840 Glycine max GLYMA18G05840 N 0.000
Gorai.003G152700 Gossypium raimondii Gorai.003G152700 N 0.000
Gorai.005G004300 Gossypium raimondii Gorai.005G004300 N 0.000
Gorai.009G173100 Gossypium raimondii Gorai.009G173100 N 0.000
Gorai.011G022400 Gossypium raimondii Gorai.011G022400 N 0.000
Gorai.011G127500 Gossypium raimondii Gorai.011G127500 N 0.000
GRMZM2G008356 Zea mays GRMZM2G008356 N 0.000
GRMZM2G158162 Zea mays GRMZM2G158162 N 0.000
GRMZM2G172621 Zea mays GRMZM2G172621 N 0.000
GSMUA_Achr4G23790_001 Musa acuminata GSMUA_Achr4G23790_001 N 0.000
GSMUA_Achr5G27930_001 Musa acuminata GSMUA_Achr5G27930_001 N 0.000
GSMUA_Achr7G00120_001 Musa acuminata GSMUA_Achr7G00120_001 N 0.000
GSMUA_Achr8G01750_001 Musa acuminata GSMUA_Achr8G01750_001 N 0.000
GSMUA_Achr8G03800_001 Musa acuminata GSMUA_Achr8G03800_001 N 0.000
HSI2 Arabidopsis lyrata scaffold_401535.1 N 0.000
HSL1 Arabidopsis lyrata scaffold_700997.1 N 0.000
HSL1 Vitis vinifera VIT_08s0058g01300 N 0.000
LjSGA_009543.1 Lotus japonicus LjSGA_009543.1 N 0.000
LjSGA_029833.1 Lotus japonicus LjSGA_029833.1 N 0.000
LPERR07G16110 Leersia perrieri LPERR07G16110 N 0.000
LPERR07G23240 Leersia perrieri LPERR07G23240 N 0.000
Lus10018440.g Linum usitatissimum Lus10018440.g N 0.000
Lus10022741.g Linum usitatissimum Lus10022741.g N 0.000
Lus10025142.g Linum usitatissimum Lus10025142.g N 0.000
Lus10025226.g Linum usitatissimum Lus10025226.g N 0.000
MDP0000127640 Malus domestica MDP0000127640 N 0.000
MDP0000229344 Malus domestica MDP0000229344 N 0.000
MDP0000267885 Malus domestica MDP0000267885 N 0.000
MDP0000274788 Malus domestica MDP0000274788 N 0.000
mgf007363m Mimulus guttatus mgf007363m N 0.000
mgf007846m Mimulus guttatus mgf007846m N 0.000
mgf013365m Mimulus guttatus mgf013365m N 0.000
mgf024907m Mimulus guttatus mgf024907m N 0.000
MLOC_36861 Hordeum vulgare MLOC_36861 N 0.000
MLOC_4657 Hordeum vulgare MLOC_4657 N 0.000
MTR_2g011940 Medicago truncatula MTR_2g011940 N 0.000
MTR_3g467380 Medicago truncatula MTR_3g467380 N 0.000
MTR_4g028130 Medicago truncatula MTR_4g028130 N 0.000
MTR_5g075410 Medicago truncatula MTR_5g075410 N 0.000
OB07G31850 Oryza brachyantha OB07G31850 N 0.000
OBART07G18780 Oryza barthii OBART07G18780 N 0.000
OBART07G26400 Oryza barthii OBART07G26400 N 0.000
OGLUM07G18530 Oryza glumaepatula OGLUM07G18530 N 0.000
OGLUM07G26430 Oryza glumaepatula OGLUM07G26430 N 0.000
OLONG_008212 Oryza longistaminata OLONG_008212 N 0.000
OLONG_013183 Oryza longistaminata OLONG_013183 N 0.000
OMERI07G15550 Oryza meridionalis OMERI07G15550 N 0.000
OMERI07G23020 Oryza meridionalis OMERI07G23020 N 0.000
ONIVA07G17160 Oryza nivara ONIVA07G17160 N 0.000
ONIVA07G26110 Oryza nivara ONIVA07G26110 N 0.000
OPUNC07G17640 Oryza punctata OPUNC07G17640 N 0.000
OPUNC07G24850 Oryza punctata OPUNC07G24850 N 0.000
orange1.1g002489m.g Citrus sinensis orange1.1g002489m.g N 0.000
orange1.1g002708m.g Citrus sinensis orange1.1g002708m.g N 0.000
orange1.1g039386m.g Citrus sinensis orange1.1g039386m.g N 0.000
ORGLA07G0151800 Oryza glaberrima ORGLA07G0151800 N 0.000
ORGLA07G0207500 Oryza glaberrima ORGLA07G0207500 N 0.000
ORUFI07G19520 Oryza rufipogon ORUFI07G19520 N 0.000
ORUFI07G27410 Oryza rufipogon ORUFI07G27410 N 0.000
OS07G0563350 Oryza sativa OS07G0563350 N 0.000
OS07G0679700 Oryza sativa OS07G0679700 N 0.000
Pavir.Ba00225 Panicum virgatum Pavir.Ba00225 N 0.000
Pavir.Ba00654 Panicum virgatum Pavir.Ba00654 N 0.000
Pavir.Bb03074 Panicum virgatum Pavir.Bb03074 N 0.000
Pavir.Bb03754 Panicum virgatum Pavir.Bb03754 N 0.000
PDK_20s13009463g004 Phoenix dactylifera PDK_20s13009463g004 N 0.000
PDK_20s13009466g004 Phoenix dactylifera PDK_20s13009466g004 N 0.000
PDK_20s1314471g001 Phoenix dactylifera PDK_20s1314471g001 N 0.000
PDK_20s1455001g004 Phoenix dactylifera PDK_20s1455001g004 N 0.000
PK04158.1 Cannabis sativa PK04158.1 N 0.000
PK09020.1 Cannabis sativa PK09020.1 N 0.000
PK13763.1 Cannabis sativa PK13763.1 N 0.000
Pm000247 Prunus mume Pm000247 N 0.000
Pm003031 Prunus mume Pm003031 N 0.000
Pm009906 Prunus mume Pm009906 N 0.000
POPTR_0004s03530 Populus trichocarpa POPTR_0004s03530 N 0.000
POPTR_0006s10880 Populus trichocarpa POPTR_0006s10880 N 0.000
POPTR_0011s04340 Populus trichocarpa POPTR_0011s04340 N 0.000
POPTR_0013s15330 Populus trichocarpa POPTR_0013s15330 N 0.000
POPTR_0016s14350 Populus trichocarpa POPTR_0016s14350 N 0.000
POPTR_0019s15070 Populus trichocarpa POPTR_0019s15070 N 0.000
PRUPE_ppa001220mg Prunus persica PRUPE_ppa001220mg N 0.000
PRUPE_ppa001229mg Prunus persica PRUPE_ppa001229mg N 0.000
PRUPE_ppa001234mg Prunus persica PRUPE_ppa001234mg N 0.000
SapurV1A.0028s0060 Salix purpurea SapurV1A.0028s0060 N 0.000
SapurV1A.0044s0150 Salix purpurea SapurV1A.0044s0150 N 0.000
SapurV1A.0065s0470 Salix purpurea SapurV1A.0065s0470 N 0.000
SapurV1A.0215s0260 Salix purpurea SapurV1A.0215s0260 N 0.000
SapurV1A.0914s0080 Salix purpurea SapurV1A.0914s0080 N 0.000
SapurV1A.1353s0040 Salix purpurea SapurV1A.1353s0040 N 0.000
Sb02g036430 Sorghum bicolor Sb02g036430 N 0.000
Sb02g043000 Sorghum bicolor Sb02g043000 N 0.000
SELMODRAFT_451626 Selaginella moellendorffii SELMODRAFT_451626 N 0.000
SELMODRAFT_451631 Selaginella moellendorffii SELMODRAFT_451631 N 0.000
SELMODRAFT_451634 Selaginella moellendorffii SELMODRAFT_451634 N 0.000
SELMODRAFT_451635 Selaginella moellendorffii SELMODRAFT_451635 N 0.000
Si028829m.g Setaria italica Si028829m.g N 0.000
Si028834m.g Setaria italica Si028834m.g N 0.000
Solyc02g079020.2 Solanum lycopersicum Solyc02g079020.2 N 0.000
Solyc06g082520.2 Solanum lycopersicum Solyc06g082520.2 N 0.000
Solyc10g075030.1 Solanum lycopersicum Solyc10g075030.1 N 0.000
TCM_019701 Theobroma cacao TCM_019701 N 0.000
TCM_029976 Theobroma cacao TCM_029976 N 0.000
TCM_042290 Theobroma cacao TCM_042290 N 0.000
Thhalv10016263m.g Eutrema salsugineum Thhalv10016263m.g N 0.000
Thhalv10024481m.g Eutrema salsugineum Thhalv10024481m.g N 0.000
Thhalv10024526m.g Eutrema salsugineum Thhalv10024526m.g N 0.000
Traes_2AS_C4FD8E351 Triticum aestivum Traes_2AS_C4FD8E351 N 0.000
Traes_2AS_F4CEC9849 Triticum aestivum Traes_2AS_F4CEC9849 N 0.000
Traes_2BS_5B00A8C50 Triticum aestivum Traes_2BS_5B00A8C50 N 0.000
Traes_2BS_A61094919 Triticum aestivum Traes_2BS_A61094919 N 0.000
Traes_2DS_3E4E3BEFC Triticum aestivum Traes_2DS_3E4E3BEFC N 0.000
Traes_2DS_B1C947D2B Triticum aestivum Traes_2DS_B1C947D2B N 0.000
TRIUR3_04238 Triticum urartu TRIUR3_04238 N 0.000
VAL1 Arabidopsis thaliana AT2G30470 N 0.000
VAL2 Arabidopsis thaliana AT4G32010 N 0.000
VAL3 Vitis vinifera VIT_00s0181g00260 N 0.000
VIT_06s0004g08100 Vitis vinifera VIT_06s0004g08100 N 0.000