Carubv10026656m.g (Capsella rubella)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Carubv10026656m.g T344770_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.980 0.876
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.975 0.752
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.940 0.496
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.928 0.545
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.928 0.545
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.901 0.446
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.901 0.446
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.880 0.388
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.868 0.372
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.854 0.364
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.849 0.355
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.849 0.355
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.844 0.355
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.843 0.380
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.843 0.380
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.843 0.380
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10026656m TCP 61 227

Links

Other TCP family TFs
Other Capsella rubella TFs

403 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O9_11920 Exophiala aquamarina A1O9_11920 N
ANIA_01402 Aspergillus nidulans CADANIAG00001203 N
ARB_02601 Arthroderma benhamiae ARB_02601 N
Bcin04g03490 Botrytis cinerea Bcin04g03490 N
BDDG_08272 Blastomyces dermatitidis BDDG_08272 N
BGHDH14_bgh01891 Blumeria graminis BGHDH14_bgh01891 I
CADAFLAG00001664 Aspergillus flavus CADAFLAG00001664 N
CIMG_07219 Coccidioides immitis CIMG_07219 N
CPC735_035380 Coccidioides posadasii CPC735_035380 N
EPUS_04591 Endocarpon pusillum EPUS_04591 N
EURHEDRAFT_443927 Aspergillus ruber EURHEDRAFT_443927 N
fgenesh1_pm.00083_#_828 Aspergillus carbonarius fgenesh1_pm.00083_#_828 N
GMDG_02644 Pseudogymnoascus destructans GMDG_02644 N
H101_07696 Trichophyton interdigitale H101_07696 N
MBM_05037 Marssonina brunnea MBM_05037 N
MCYG_01409 Arthroderma otae MCYG_01409 N
MCYG_01409 Microsporum canis MCYG_01409 N
MGYG_01953 Microsporum gypseum MGYG_01953 N
NFIA_016950 Neosartorya fischeri CADNFIAG00001487 N
PAAG_11083 Paracoccidioides sp lutzii PAAG_11083 N
PABG_06594 Paracoccidioides brasiliensis PABG_06594 N
Pc16g01710 Penicillium chrysogenum Pc16g01710 N
PCH_Pc16g01710 Penicillium rubens PCH_Pc16g01710 N
PDE_06843 Penicillium oxalicum PDE_06843 N
PEX1_039750 Penicillium expansum PEX1_039750 N
PITC_099380 Penicillium italicum PITC_099380 N
PVAR5_6661 Byssochlamys spectabilis PVAR5_6661 N
SBOR_8201 Sclerotinia borealis SBOR_8201 N
SNOG_04842 Phaeosphaeria nodorum SNOG_04842 N
SNOG_04842 Stagonospora nodorum SNOG_04842 N
SS1G_03805 Sclerotinia sclerotiorum SS1G_03805 N
TEQG_07198 Trichophyton equinum TEQG_07198 N
TESG_06051 Trichophyton tonsurans TESG_06051 N
TRV_05768 Trichophyton verrucosum TRV_05768 N
U727_00431841361 Penicillium solitum U727_00431841361 N
UREG_05691 Uncinocarpus reesii UREG_05691 N