CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.009G289000 *(Gossypium raimondii)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03634 (TCP)	IPR005333	Gorai.009G289000	T344872_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.971	0.752
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.970	0.724
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.970	0.724
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.969	0.724
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.967	0.705
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.965	0.705
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.962	0.705
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.962	0.705
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.962	0.705
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.962	0.705
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.959	0.619
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.958	0.600
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.958	0.600
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.955	0.581
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.955	0.571
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.950	0.552
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.949	0.562
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.949	0.581
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.949	0.581
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.949	0.581
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.948	0.543
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.948	0.543
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.948	0.543
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.948	0.543
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.947	0.610
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.947	0.562
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.947	0.562
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.947	0.581
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.946	0.562
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.945	0.543
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.945	0.562
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.939	0.533
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.939	0.524
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.897	0.514
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.897	0.514
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.009G289000.1	TCP	100	276	RPTKDRHTKVDGRGRRIRMPAVCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSTLNVSLRSSGSTISAPSSKSAPLSFHSALGFYNSNGDEARRIGNSTAMLGFHHQLYPQLLHPETHMRSGSNPNDNYATKPFRDDLFKETSQHNAETGAIDANSPKPERT

Links
Other TCP family TFs
Other *Gossypium raimondii* TFs

656 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ENSAMEG00000009347	Ailuropoda melanoleuca	ENSAMEG00000009347	I	0.000
ENSCAFG00000023024	Canis familiaris	ENSCAFG00000023024	I	0.000
ENSCAFG00000025411	Canis familiaris	ENSCAFG00000025411	I	0.000
ENSCAFG00000031919	Canis familiaris	ENSCAFG00000031919	I	0.000
ENSCJAG00000004097	Callithrix jacchus	ENSCJAG00000004097	I	0.000
ENSCSAG00000007182	Chlorocebus sabaeus	ENSCSAG00000007182	I	0.000
ENSDNOG00000015218	Dasypus novemcinctus	ENSDNOG00000015218	I	0.000
ENSDNOG00000043873	Dasypus novemcinctus	ENSDNOG00000043873	I	0.000
ENSFCAG00000025614	Felis catus	ENSFCAG00000025614	I	0.000
ENSGGOG00000022734	Gorilla gorilla	ENSGGOG00000022734	I	0.000
ENSMMUG00000002887	Macaca mulatta	ENSMMUG00000002887	I	0.000
ENSNLEG00000013483	Nomascus leucogenys	ENSNLEG00000013483	I	0.000
ENSP00000306549-D3	Bos grunniens	ENSP00000306549-D3	N	0.000
ENSP00000359444	Macaca fascicularis	ENSP00000359444	I	0.000
ENSP00000410851-D3	Bos grunniens	ENSP00000410851-D3	I	0.000
ENSPANG00000004032	Papio anubis	ENSPANG00000004032	I	0.000
ENSPPYG00000020808	Pongo abelii	ENSPPYG00000020808	I	0.000
ENSSSCG00000012734	Sus scrofa	ENSSSCG00000012734	I	0.000
ENSTBEG00000002283	Tupaia belangeri	ENSTBEG00000002283	I	0.000
HSFX1	Homo sapiens	ENSG00000171116	I	0.000
HSFX2	Homo sapiens	ENSG00000268738	I	0.000

Gorai.009G289000 (Gossypium raimondii) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

656 Related TFs

Gorai.009G289000 **(Gossypium raimondii)
TCP**