Lus10041328.g (Linum usitatissimum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Lus10041328.g T344907_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.883 0.430
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.874 0.453
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.874 0.453
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.874 0.453
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.874 0.453
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.867 0.453
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.855 0.500
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.850 0.430
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.848 0.419
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.848 0.419
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.843 0.395
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.839 0.419
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.839 0.419
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.837 0.488
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.833 0.488
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.831 0.488
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.831 0.477
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.827 0.419
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10041328 TCP 39 150

Links

Other TCP family TFs
Other Linum usitatissimum TFs

398 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R001674 Calypte anna Aan_R001674 I 0.000
Afo_R011034 Aptenodytes forsteri Afo_R011034 I 0.000
Alligator_sinensis_CCG004420.1 Alligator sinensis Alligator_sinensis_CCG004420.1 I 0.000
Brh_R003425 Buceros rhinoceros Brh_R003425 I 0.000
Cmyd_10012311 Chelonia mydas Cmyd_10012311 I 0.000
ENSAMEG00000019557 Ailuropoda melanoleuca ENSAMEG00000019557 I 0.000
ENSAPLG00000001073 Anas platyrhynchos ENSAPLG00000001073 I 0.000
ENSLACG00000016384 Latimeria chalumnae ENSLACG00000016384 I 0.000
ENSNLEG00000014246 Nomascus leucogenys ENSNLEG00000014246 I 0.000
ENSOARG00000001006 Ovis aries ENSOARG00000001006 I 0.000
ENSP00000378201 Macaca fascicularis ENSP00000378201 I 0.000
ENSP00000378201-D1 Bos grunniens ENSP00000378201-D1 I 0.000
ENSSHAG00000010188 Sarcophilus harrisii ENSSHAG00000010188 I 0.000
ENSSTOG00000028335 Ictidomys tridecemlineatus ENSSTOG00000028335 I 0.000
Gfo_R006806 Geospiza fortis Gfo_R006806 I 0.000
Ogr05927 Ophisaurus gracilis Ogr05927 I 0.000
Pvit_18915 Pogona vitticeps Pvit_18915 I 0.000
Tal_R000310 Tyto alba Tal_R000310 I 0.000
ZBTB1 Myotis lucifugus ENSMLUG00000016560 I 0.000
ZBTB1 Anolis carolinensis ENSACAG00000015782 I 0.000
ZBTB1 Bos taurus ENSBTAG00000040551 I 0.000
ZBTB1 Canis familiaris ENSCAFG00000016030 I 0.000
ZBTB1 Callithrix jacchus ENSCJAG00000019591 I 0.000
ZBTB1 Cavia porcellus ENSCPOG00000011379 I 0.000
ZBTB1 Dasypus novemcinctus ENSDNOG00000015051 I 0.000
ZBTB1 Felis catus ENSFCAG00000031472 I 0.000
ZBTB1 Homo sapiens ENSG00000126804 I 0.000
ZBTB1 Gorilla gorilla ENSGGOG00000016483 I 0.000
ZBTB1 Meleagris gallopavo ENSMGAG00000015392 I 0.000
ZBTB1 Oryctolagus cuniculus ENSOCUG00000011740 I 0.000
ZBTB1 Vicugna pacos ENSVPAG00000004877 I 0.000
ZBTB1 Tursiops truncatus ENSTTRG00000000531 I 0.000
ZBTB1 Taeniopygia guttata ENSTGUG00000012931 I 0.000
ZBTB1 Monodelphis domestica ENSMODG00000023946 I 0.000
ZBTB1 Sus scrofa ENSSSCG00000023724 I 0.000
Zbtb1 Mus musculus ENSMUSG00000033454 D 0.000
ZBTB1 Pteropus vampyrus ENSPVAG00000017582 I 0.000
ZBTB1 Pan troglodytes ENSPTRG00000006438 I 0.000
ZBTB1 Ochotona princeps ENSOPRG00000010400 I 0.000
ZBTB1 Otolemur garnettii ENSOGAG00000016795 I 0.000