Pavir.Ib04362 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.Ib04362 T345008_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TB1
M01312_2.00 		Oryza sativa
GGSCCCCCYM
KRGGGGGSCC		 PBM
Lambert et al.(2019)
pTH8740 		0.945 0.678
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04362.1.p TCP 112 264

Links

Other TCP family TFs
Other Panicum virgatum TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29738.m001041 Ricinus communis 29738.m001041 I 0.826
AC190734.2_FG003 Zea mays AC190734.2_FG003 I 0.912
AC233950.1_FG002 Zea mays AC233950.1_FG002 I 0.938
BGIOSGA013417 Oryza indica BGIOSGA013417 I 0.945
BGIOSGA028717 Oryza indica BGIOSGA028717 I 0.826
BGIOSGA030744 Oryza indica BGIOSGA030744 I 0.853
Bo1g117490 Brassica oleracea Bo1g117490 I 0.827
Bo3g071560 Brassica oleracea Bo3g071560 I 0.835
Bo5g117410 Brassica oleracea Bo5g117410 N 0.841
Bostr.19424s0807 Boechera stricta Bostr.19424s0807 I 0.844
Bra001710 Brassica rapa Bra001710 I 0.829
Bra037579 Brassica rapa Bra037579 I 0.833
BRADI1G11060 Brachypodium distachyon BRADI1G11060 I 0.934
BRADI3G36590 Brachypodium distachyon BRADI3G36590 N 0.828
BRADI4G29980 Brachypodium distachyon BRADI4G29980 I 0.838
BRC1 Arabidopsis lyrata scaffold_302193.1 N 0.829
BRC1 Arabidopsis thaliana AT3G18550 I 0.833
Cagra.1681s0023 Capsella grandiflora Cagra.1681s0023 I 0.845
Carubv10013748m.g Capsella rubella Carubv10013748m.g I 0.845
Carubv10020555m.g Capsella rubella Carubv10020555m.g I 0.828
evm.TU.supercontig_179.29 Carica papaya evm.TU.supercontig_179.29 I 0.846
F775_01923 Aegilops tauschii F775_01923 I 0.834
Gorai.001G200400 Gossypium raimondii Gorai.001G200400 I 0.829
GRMZM2G055024 Zea mays GRMZM2G055024 I 0.838
GRMZM2G060319 Zea mays GRMZM2G060319 I 0.845
GRMZM2G064628 Zea mays GRMZM2G064628 I 0.834
GRMZM2G110242 Zea mays GRMZM2G110242 I 0.847
GRMZM2G166687 Zea mays GRMZM2G166687 I 0.833
GSMUA_Achr10G25520_001 Musa acuminata GSMUA_Achr10G25520_001 I 0.833
GSMUA_Achr2G21050_001 Musa acuminata GSMUA_Achr2G21050_001 I 0.843
GSMUA_Achr2G22480_001 Musa acuminata GSMUA_Achr2G22480_001 I 0.837
LPERR03G25950 Leersia perrieri LPERR03G25950 I 0.953
LPERR08G12880 Leersia perrieri LPERR08G12880 I 0.847
LPERR09G06870 Leersia perrieri LPERR09G06870 I 0.868
MDP0000224810 Malus domestica MDP0000224810 N 0.842
mgf026636m Mimulus guttatus mgf026636m I 0.837
MLOC_4614 Hordeum vulgare MLOC_4614 I 0.867
MLOC_58142 Hordeum vulgare MLOC_58142 I 0.828
MLOC_70116 Hordeum vulgare MLOC_70116 I 0.931
OB03G38320 Oryza brachyantha OB03G38320 I 0.855
OBART03G31290 Oryza barthii OBART03G31290 I 0.958
OBART09G10040 Oryza barthii OBART09G10040 I 0.853
OGLUM03G31540 Oryza glumaepatula OGLUM03G31540 I 0.945
OGLUM08G16380 Oryza glumaepatula OGLUM08G16380 I 0.831
OGLUM09G10300 Oryza glumaepatula OGLUM09G10300 I 0.853
OMERI03G27910 Oryza meridionalis OMERI03G27910 I 0.959
OMERI08G12900 Oryza meridionalis OMERI08G12900 I 0.830
OMERI09G07770 Oryza meridionalis OMERI09G07770 I 0.847
ONIVA03G32600 Oryza nivara ONIVA03G32600 I 0.945
ONIVA08G16720 Oryza nivara ONIVA08G16720 I 0.823
ONIVA09G09540 Oryza nivara ONIVA09G09540 I 0.853
OPUNC03G28490 Oryza punctata OPUNC03G28490 I 0.936
OPUNC08G13710 Oryza punctata OPUNC08G13710 I 0.842
OPUNC09G08520 Oryza punctata OPUNC09G08520 I 0.834
ORGLA03G0289500 Oryza glaberrima ORGLA03G0289500 I 0.958
ORGLA08G0137200 Oryza glaberrima ORGLA08G0137200 I 0.823
ORUFI03G32570 Oryza rufipogon ORUFI03G32570 I 0.945
ORUFI08G17540 Oryza rufipogon ORUFI08G17540 I 0.826
ORUFI09G10660 Oryza rufipogon ORUFI09G10660 I 0.853
OS08G0432300 Oryza sativa OS08G0432300 I 0.826
OS09G0410500 Oryza sativa OS09G0410500 I 0.853
Pavir.Ba01820 Panicum virgatum Pavir.Ba01820 I 0.840
Pavir.Bb02154 Panicum virgatum Pavir.Bb02154 I 0.835
Pavir.Fa00870 Panicum virgatum Pavir.Fa00870 I 0.848
Pavir.Fb01590 Panicum virgatum Pavir.Fb01590 I 0.833
Pavir.Ia00838 Panicum virgatum Pavir.Ia00838 I 0.977
Pm030202 Prunus mume Pm030202 I 0.827
PRUPE_ppa015026mg Prunus persica PRUPE_ppa015026mg I 0.827
Sb01g010690 Sorghum bicolor Sb01g010690 I 0.953
Sb02g024450 Sorghum bicolor Sb02g024450 I 0.854
Sb07g021140 Sorghum bicolor Sb07g021140 I 0.840
Si015230m.g Setaria italica Si015230m.g I 0.842
Si033183m.g Setaria italica Si033183m.g I 0.845
Si038692m.g Setaria italica Si038692m.g I 0.975
TB1 Oryza sativa OS03G0706500 D 0.945
Thhalv10021948m.g Eutrema salsugineum Thhalv10021948m.g N 0.832
Traes_4AL_75D069945 Triticum aestivum Traes_4AL_75D069945 I 0.933
Traes_4BS_DC076554D Triticum aestivum Traes_4BS_DC076554D I 0.932
Traes_4DS_59A46B69A Triticum aestivum Traes_4DS_59A46B69A I 0.933
Traes_5BL_19F383CC71 Triticum aestivum Traes_5BL_19F383CC71 I 0.828
Traes_5DL_46A3B0DAB1 Triticum aestivum Traes_5DL_46A3B0DAB1 I 0.839
TRIUR3_20728 Triticum urartu TRIUR3_20728 I 0.844
TRIUR3_31795 Triticum urartu TRIUR3_31795 I 0.933