Pavir.J23534 (Panicum virgatum)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Pavir.J23534 T345022_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS02G0635800
M02512_2.00 		Oryza sativa
NBGGGCCCVN
NBGGGCCCVN		 PBM
Weirauch et al.(2014)
pTH8856 		0.968 0.673
OsI_08196
M02513_2.00 		Oryza sativa
GGGCCCAC
GTGGGCCC		 PBM
Weirauch et al.(2014)
pTH9274 		0.968 0.664
TCP21
M07292_2.00 		Arabidopsis thaliana
NNRTGGGDCCCACN
NGTGGGHCCCAYNN		 Dap-seq
OMalley et al.(2016)
At5g08330_col_a 		0.954 0.575
TCP21
M07293_2.00 		Arabidopsis thaliana
RTRGGDCCCACH
DGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At5g08330_colamp_a 		0.954 0.575
TCP7
M07294_2.00 		Arabidopsis thaliana
RTGGGNCCCAC
GTGGGNCCCAY		 Dap-seq
OMalley et al.(2016)
TCP7_col_a 		0.952 0.540
TCP15
M00892_2.00 		Arabidopsis thaliana
NNGGNCCCAC
GTGGGNCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP15 		0.942 0.504
TCP15
M07277_2.00 		Arabidopsis thaliana
RTRGGDCCCACHH
DDGTGGGHCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_col_a 		0.942 0.504
TCP15
M07278_2.00 		Arabidopsis thaliana
RTRGGNCCCACHW
WDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g69690_colamp_a 		0.942 0.504
TCP15
M11394_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP15_01 		0.942 0.504
TCP8
M01311_2.00 		Arabidopsis thaliana
NGGNMCCAC
GTGGKNCCN		 PBM
Lambert et al.(2019)
pTH11569 		0.940 0.496
PK12736.1
M01315_2.00 		Cannabis sativa
NRRSCMYAYNNNNN
NNNNNRTRKGSYYN		 PBM
Lambert et al.(2019)
pTH10121 		0.939 0.469
TCP23
M00891_2.00 		Arabidopsis thaliana
NNGGKCCCAC
GTGGGMCCNN		 PBM
Franco-Zorrilla et al.(2014)
TCP23 		0.939 0.478
TCP14
M07289_2.00 		Arabidopsis thaliana
AVADAKVDBGTGGGDCCCAC
GTGGGHCCCACVHBMTHTBT		 Dap-seq
OMalley et al.(2016)
TCP14_col_b 		0.938 0.478
TCP22
M07279_2.00 		Arabidopsis thaliana
RTRGGNCCCACHN
NDGTGGGNCCYAY		 Dap-seq
OMalley et al.(2016)
At1g72010_colamp_a 		0.935 0.522
TCP22
M07280_2.00 		Arabidopsis thaliana
RTGGGDCCCACNN
NNGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At1g72010_col 		0.935 0.522
PK13314.1
M01316_2.00 		Cannabis sativa
NNGGNCCCAC
GTGGGNCCNN		 PBM
Lambert et al.(2019)
pTH11330 		0.930 0.496
cassava45561.m1
M02516_2.00 		Manihot esculenta
KGGVCCCACH
DGTGGGBCCM		 PBM
Weirauch et al.(2014)
pTH9207 		0.929 0.487
AT-TCP20
M02507_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9229 		0.929 0.478
fgenesh2_kg.8__1074__AT5G51910.2
M02509_2.00 		Arabidopsis lyrata
GRSCCCAC
GTGGGSYC		 PBM
Weirauch et al.(2014)
pTH9232 		0.928 0.434
TCP20
M02502_2.00 		Arabidopsis thaliana
GGSCCCACNN
NNGTGGGSCC		 PBM
Weirauch et al.(2014)
pTH8159 		0.927 0.469
TCP20
M07285_2.00 		Arabidopsis thaliana
NNNNNNNNNNGTGGGRCCCAC
GTGGGYCCCACNNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
TCP20_col_a 		0.927 0.469
TCP20
M07286_2.00 		Arabidopsis thaliana
RTGGGDCCCACH
DGTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
TCP20_colamp_a 		0.927 0.469
TCP20
M11397_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP20_01 		0.927 0.469
GLYMA19G26560
M02511_2.00 		Glycine max
BGGBCCCAC
GTGGGVCCV		 PBM
Weirauch et al.(2014)
pTH9184 		0.924 0.451
TCP19
M02504_2.00 		Arabidopsis thaliana
NNGGVCCCAC
GTGGGBCCNN		 PBM
Weirauch et al.(2014)
pTH7452 		0.924 0.416
PCF2
M11399_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF2_01 		0.923 0.425
PK14653.1
M01317_2.00 		Cannabis sativa
BGGSCCCAC
GTGGGSCCV		 PBM
Lambert et al.(2019)
pTH11324 		0.923 0.434
PK14653.1
M02517_2.00 		Cannabis sativa
BTGGGCCCAV
BTGGGCCCAV		 PBM
Weirauch et al.(2014)
pTH9586 		0.923 0.434
VIT_15s0048g01150
M02515_2.00 		Vitis vinifera
NNGGNCCCAC
GTGGGNCCNN		 PBM
Weirauch et al.(2014)
pTH9294 		0.920 0.442
TCP9
M01086_2.00 		Arabidopsis thaliana
NNGGGCCCACN
NGTGGGCCCNN		 PBM
Sullivan et al.(2014)
pTH9796 		0.918 0.434
TCP9
M07281_2.00 		Arabidopsis thaliana
RTGGGDCCCAC
GTGGGHCCCAY		 Dap-seq
OMalley et al.(2016)
At2g45680_colamp_a 		0.918 0.434
TCP9
M07282_2.00 		Arabidopsis thaliana
DGTGGGRCCCACDDNDNDNBN
NVNHNHNHHGTGGGYCCCACH		 Dap-seq
OMalley et al.(2016)
At2g45680_col_b 		0.918 0.434
LjSGA_053525.1
M02518_2.00 		Lotus japonicus
GGNCCCAC
GTGGGNCC		 PBM
Weirauch et al.(2014)
pTH9201 		0.912 0.407
TCP11
M11395_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_01 		0.856 0.425
TCP11
M11396_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TCP11_02 		0.856 0.425
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J23534.1.p TCP 45 197

Links

Other TCP family TFs
Other Panicum virgatum TFs

636 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29912.m005337 Ricinus communis 29912.m005337 I 0.000
Al_scaffold_0008_2143 Arabidopsis lyrata Al_scaffold_0008_2143 I 0.000
AT5G56960 Arabidopsis thaliana AT5G56960 I 0.000
Bo2g032920 Brassica oleracea Bo2g032920 I 0.000
Bostr.26833s0565 Boechera stricta Bostr.26833s0565 I 0.000
Bra035639 Brassica rapa Bra035639 I 0.000
Cagra.1569s0004 Capsella grandiflora Cagra.1569s0004 I 0.000
Carubv10026331m.g Capsella rubella Carubv10026331m.g I 0.000
cassava25701.m1 Manihot esculenta cassava25701.m1 I 0.000
cassava46879.m1 Manihot esculenta cassava46879.m1 I 0.000
Ciclev10007937m.g Citrus clementina Ciclev10007937m.g I 0.000
Cla017100 Citrullus lanatus Cla017100 I 0.000
Cucsa.117060 Cucumis sativus Cucsa.117060 I 0.000
Eucgr.C03476 Eucalyptus grandis Eucgr.C03476 I 0.000
gene12658-v1.0-hybrid Fragaria vesca gene12658-v1.0-hybrid I 0.000
GLYMA09G07391 Glycine max GLYMA09G07391 I 0.000
GLYMA15G18580 Glycine max GLYMA15G18580 I 0.000
GRMZM2G175480 Zea mays GRMZM2G175480 N 0.000
GSMUA_Achr6G00900_001 Musa acuminata GSMUA_Achr6G00900_001 I 0.000
GSMUA_Achr7G09080_001 Musa acuminata GSMUA_Achr7G09080_001 N 0.000
LjT02N03.60.nd Lotus japonicus LjT02N03.60.nd I 0.000
MDP0000119495 Malus domestica MDP0000119495 I 0.000
MDP0000252899 Malus domestica MDP0000252899 I 0.000
MDP0000782908 Malus domestica MDP0000782908 I 0.000
mgf018190m Mimulus guttatus mgf018190m I 0.000
OPUNC05G05910 Oryza punctata OPUNC05G05910 I 0.000
orange1.1g008967m.g Citrus sinensis orange1.1g008967m.g I 0.000
PGSC0003DMG400000335 Solanum tuberosum PGSC0003DMG400000335 I 0.000
PK15505.1 Cannabis sativa PK15505.1 D 0.000
Pm027191 Prunus mume Pm027191 I 0.000
POPTR_0006s15310 Populus trichocarpa POPTR_0006s15310 I 0.000
PRUPE_ppa020972mg Prunus persica PRUPE_ppa020972mg I 0.000
TCM_037645 Theobroma cacao TCM_037645 I 0.000
Thhalv10013360m.g Eutrema salsugineum Thhalv10013360m.g I 0.000
VIT_11s0016g02070 Vitis vinifera VIT_11s0016g02070 I 0.000