6292_YER064C (Saccharomyces paradoxus)
VHR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04001 (Vhr1) IPR007147 6292_YER064C T350458_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VHR2
M00917_2.00 		Saccharomyces cerevisiae
NRTGACTCAN
NTGAGTCAYN		 PBM
Gordan et al.(2011)
Vhr2 		0.934 0.934
VHR1
M08640_2.00 		Saccharomyces cerevisiae
TCANNNNNNNNTGATT
AATCANNNNNNNNTGA		 Misc
DeBoer et al.(2011)
YIL056W_1325 		0.802 0.802
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
6292_YER064C VHR1 22 112

Links

Other VHR1 family TFs
Other Saccharomyces paradoxus TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I 0.000
Bra019436 Brassica rapa Bra019436 I 0.000
BRADI2G55550 Brachypodium distachyon BRADI2G55550 I 0.000
Ca_07056 Cicer arietinum Ca_07056 I 0.000
Ca_19689 Cicer arietinum Ca_19689 I 0.000
Eucgr.A02171 Eucalyptus grandis Eucgr.A02171 I 0.000
GLYMA12G30975 Glycine max GLYMA12G30975 I 0.000
GLYMA13G39340 Glycine max GLYMA13G39340 I 0.000
Gorai.013G258300 Gossypium raimondii Gorai.013G258300 I 0.000
GSMUA_Achr10G00420_001 Musa acuminata GSMUA_Achr10G00420_001 I 0.000
Lus10019542.g Linum usitatissimum Lus10019542.g N 0.000
MTR_2g086340 Medicago truncatula MTR_2g086340 I 0.000
MTR_6g026800 Medicago truncatula MTR_6g026800 I 0.000
OPUNC05G18710 Oryza punctata OPUNC05G18710 I 0.000
PK24205.1 Cannabis sativa PK24205.1 D 0.000
POPTR_0006s02670 Populus trichocarpa POPTR_0006s02670 I 0.000
POPTR_0016s02460 Populus trichocarpa POPTR_0016s02460 I 0.000
SapurV1A.0362s0080 Salix purpurea SapurV1A.0362s0080 I 0.000
SapurV1A.2287s0010 Salix purpurea SapurV1A.2287s0010 I 0.000
SELMODRAFT_91900 Selaginella moellendorffii SELMODRAFT_91900 I 0.000
SELMODRAFT_94516 Selaginella moellendorffii SELMODRAFT_94516 I 0.000