Cagra.8153s0001 (Capsella grandiflora)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03106 (WRKY) IPR003657 Cagra.8153s0001 T355931_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY38
M00901_2.00 		Arabidopsis thaliana
NNRGTCAACBN
NVGTTGACYNN		 PBM
Franco-Zorrilla et al.(2014)
WRKY38 		0.871 0.915
WRKY62
M02561_2.00 		Arabidopsis thaliana
TRGTCAAM
KTTGACYA		 PBM
Weirauch et al.(2014)
pTH8246 		0.833 0.661
WRKY63
M02546_2.00 		Arabidopsis thaliana
NGGTCAAN
NTTGACCN		 PBM
Weirauch et al.(2014)
pTH8182 		0.824 0.661
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.8153s0001.1.p WRKY 113 173

Links

Other WRKY family TFs
Other Capsella grandiflora TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0002_1233 Arabidopsis lyrata Al_scaffold_0002_1233 I 0.834
BGIOSGA030346 Oryza indica BGIOSGA030346 I 0.000
Bo01002s040 Brassica oleracea Bo01002s040 I 0.864
Bo2g024040 Brassica oleracea Bo2g024040 I 0.868
Bo2g095820 Brassica oleracea Bo2g095820 I 0.817
Bo5g068250 Brassica oleracea Bo5g068250 I 0.837
Bostr.20129s0455 Boechera stricta Bostr.20129s0455 I 0.815
Bostr.25463s0359 Boechera stricta Bostr.25463s0359 I 0.808
Bostr.26527s0018 Boechera stricta Bostr.26527s0018 I 0.894
Bostr.26959s0259 Boechera stricta Bostr.26959s0259 I 0.000
Bostr.26959s0261 Boechera stricta Bostr.26959s0261 I 0.831
Bostr.26959s0262 Boechera stricta Bostr.26959s0262 I 0.836
Bostr.5022s0087 Boechera stricta Bostr.5022s0087 I 0.000
Bostr.6251s0160 Boechera stricta Bostr.6251s0160 I 0.839
Bra002421 Brassica rapa Bra002421 I 0.864
Bra008456 Brassica rapa Bra008456 I 0.000
Bra008459 Brassica rapa Bra008459 I 0.817
Bra020196 Brassica rapa Bra020196 I 0.869
Bra020197 Brassica rapa Bra020197 I 0.868
Bra023211 Brassica rapa Bra023211 I 0.837
Bra028918 Brassica rapa Bra028918 I 0.848
Cagra.0255s0014 Capsella grandiflora Cagra.0255s0014 I 0.835
Cagra.15225s0001 Capsella grandiflora Cagra.15225s0001 I 0.836
Cagra.20277s0001 Capsella grandiflora Cagra.20277s0001 I 0.000
Carubv10002472m.g Capsella rubella Carubv10002472m.g I 0.905
Carubv10012720m.g Capsella rubella Carubv10012720m.g I 0.835
Carubv10021420m.g Capsella rubella Carubv10021420m.g I 0.836
Carubv10021860m.g Capsella rubella Carubv10021860m.g I 0.830
Carubv10021899m.g Capsella rubella Carubv10021899m.g I 0.822
Carubv10022120m.g Capsella rubella Carubv10022120m.g I 0.821
Carubv10022162m.g Capsella rubella Carubv10022162m.g I 0.819
LPERR05G16170 Leersia perrieri LPERR05G16170 I 0.000
MDP0000828055 Malus domestica MDP0000828055 I 0.000
MLOC_22356 Hordeum vulgare MLOC_22356 I 0.000
MLOC_3853 Hordeum vulgare MLOC_3853 N 0.000
MTR_5g067680 Medicago truncatula MTR_5g067680 I 0.000
OBART05G20340 Oryza barthii OBART05G20340 I 0.000
OGLUM05G21420 Oryza glumaepatula OGLUM05G21420 I 0.000
OLONG_002978 Oryza longistaminata OLONG_002978 I 0.000
OMERI05G18170 Oryza meridionalis OMERI05G18170 I 0.000
OMERI05G18260 Oryza meridionalis OMERI05G18260 I 0.000
ONIVA05G21440 Oryza nivara ONIVA05G21440 I 0.000
OPUNC05G17980 Oryza punctata OPUNC05G17980 I 0.000
ORGLA05G0177200 Oryza glaberrima ORGLA05G0177200 I 0.000
ORUFI05G21560 Oryza rufipogon ORUFI05G21560 I 0.000
OS05G0478400 Oryza sativa OS05G0478400 I 0.000
TCM_045555 Theobroma cacao TCM_045555 I 0.000
Thhalv10000686m.g Eutrema salsugineum Thhalv10000686m.g I 0.816
Thhalv10014700m.g Eutrema salsugineum Thhalv10014700m.g I 0.847
Thhalv10015295m.g Eutrema salsugineum Thhalv10015295m.g I 0.866
Thhalv10029232m.g Eutrema salsugineum Thhalv10029232m.g I 0.812
TRIUR3_33054 Triticum urartu TRIUR3_33054 I 0.000
WRKY38 Arabidopsis lyrata scaffold_602308.1 I 0.871
WRKY38 Arabidopsis thaliana AT5G22570 D 0.871
WRKY55 Vitis vinifera VIT_13s0067g03130 I 0.000
WRKY62 Arabidopsis thaliana AT5G01900 D 0.833
WRKY62 Arabidopsis lyrata Al_scaffold_0006_13 I 0.833
WRKY63 Arabidopsis thaliana AT1G66600 D 0.824
WRKY64 Arabidopsis thaliana AT1G66560 I 0.831
WRKY66 Arabidopsis thaliana AT1G80590 I 0.830
WRKY67 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2000969 I 0.829
WRKY67 Arabidopsis thaliana AT1G66550 I 0.831