CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.008G041400 *(Gossypium raimondii)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF03106 (WRKY)	IPR003657	Gorai.008G041400	T356307_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY6 M07377_2.00	Arabidopsis thaliana	DNNNHNDHNHNRGTCAACG	CGTTGACYNDNDHNDNNNH	Dap-seq OMalley et al.(2016) WRKY6_col_a	0.875	0.881
WRKY6 M07378_2.00	Arabidopsis thaliana	NNHNWRGTCAACKNH	DNMGTTGACYWNDNN	Dap-seq OMalley et al.(2016) WRKY6_colamp_a	0.875	0.881
WRKY31 M07408_2.00	Arabidopsis thaliana	NNNNHNNNNNDRGTCAACG	CGTTGACYHNNNNNDNNNN	Dap-seq OMalley et al.(2016) WRKY31_col_a	0.873	0.881
WRKY31 M07409_2.00	Arabidopsis thaliana	NHWRGTCAACKNH	DNMGTTGACYWDN	Dap-seq OMalley et al.(2016) WRKY31_colamp_a	0.873	0.881
WRKY42 M07404_2.00	Arabidopsis thaliana	NDWRGTCAACDNNNNDNNHNN	NNDNNHNNNNHGTTGACYWHN	Dap-seq OMalley et al.(2016) WRKY42_col_a	0.871	0.864
WRKY42 M07405_2.00	Arabidopsis thaliana	HNDNNNWRGTCAACKNHNDD	HHNDNMGTTGACYWNNNHND	Dap-seq OMalley et al.(2016) WRKY42_colamp_a	0.871	0.864
WRKY47 M00732_2.00	Arabidopsis thaliana	NNRGTCAACKN	NMGTTGACYNN	PBM Chang et al.(2013) pTH7913	0.869	0.864
WRKY47 M07402_2.00	Arabidopsis thaliana	WRGTCAAMGNHVDK	MHBDNCKTTGACYW	Dap-seq OMalley et al.(2016) WRKY47_col_a	0.869	0.864
WRKY47 M07403_2.00	Arabidopsis thaliana	NNNHWRGTCAACKNHNNNN	NNNNDNMGTTGACYWDNNN	Dap-seq OMalley et al.(2016) WRKY47_colamp_a	0.869	0.864
WRKY60 M02551_2.00	Arabidopsis thaliana	NYGGTCAAMNN	NNKTTGACCRN	PBM Weirauch et al.(2014) pTH7379	0.820	0.644
WRKY40 M02548_2.00	Arabidopsis thaliana	NRGTCAWN	NWTGACYN	PBM Weirauch et al.(2014) pTH8398	0.819	0.627
WRKY40 M07379_2.00	Arabidopsis thaliana	NNNAAAGTCAAVR	YBTTGACTTTNNN	Dap-seq OMalley et al.(2016) WRKY40_colamp_a	0.819	0.627
WRKY40 M07380_2.00	Arabidopsis thaliana	NNVAAAGTCAAVRNH	DNYBTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY40_col	0.819	0.627
WRKY40 M08180_2.00	Arabidopsis thaliana	NNAGTCAANN	NNTTGACTNN	ChIP-seq Mathelier et al.(2014) MA1085.2	0.819	0.627
WRKY18 M02560_2.00	Arabidopsis thaliana	NNRGTCAANN	NNTTGACYNN	PBM Weirauch et al.(2014) pTH7360	0.816	0.661
WRKY18 M00900_2.00	Arabidopsis thaliana	NVGTCNN	NNGACBN	PBM Franco-Zorrilla et al.(2014) WRKY18	0.816	0.661
WRKY18 M07416_2.00	Arabidopsis thaliana	NNHRGTCAASR	YSTTGACYDNN	Dap-seq OMalley et al.(2016) WRKY18_col_a	0.816	0.661
WRKY18 M07417_2.00	Arabidopsis thaliana	NNNHWAGTCAANR	YNTTGACTWDNNN	Dap-seq OMalley et al.(2016) WRKY18_colamp_a	0.816	0.661
WRKY18 M11465_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY18_Q2	0.816	0.661
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.008G041400.1	WRKY	300	358	NDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNHP

Links
Other WRKY family TFs
Other *Gossypium raimondii* TFs

780 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ACYPI001323	Acyrthosiphon pisum	ACYPI001323	I	0.000
ANCCAN_07437	Ancylostoma caninum	ANCCAN_07437	I	0.000
ANCCEY_02986	Ancylostoma ceylanicum	ANCCEY_02986	I	0.000
CGI_10024861	Crassostrea gigas	CGI_10024861	I	0.000
HCOI00814500	Haemonchus contortus	HCOI00814500	I	0.000
L889_g19010	Steinernema feltiae	L889_g19010	I	0.000
L892_g30919	Steinernema scapterisci	L892_g30919	I	0.000
L898_g8988	Steinernema monticolum	L898_g8988	I	0.000
Ocbimv22035930m.g	Octopus bimaculoides	Ocbimv22035930m.g	I	0.000
OESDEN_08775	Oesophagostomum dentatum	OESDEN_08775	I	0.000
OESDEN_13828	Oesophagostomum dentatum	OESDEN_13828	I	0.000
SMUV_0000634801	Syphacia muris	SMUV_0000634801	I	0.000
SPAL_0000715500	Strongyloides papillosus	SPAL_0000715500	I	0.000
SSTP_0000029700	Strongyloides stercoralis	SSTP_0000029700	I	0.000
SVE_0161000	Strongyloides venezuelensis	SVE_0161000	I	0.000
TELCIR_07015	Teladorsagia circumcincta	TELCIR_07015	I	0.000
TELCIR_18693	Teladorsagia circumcincta	TELCIR_18693	I	0.000

Gorai.008G041400 (Gossypium raimondii) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

780 Related TFs

Gorai.008G041400 **(Gossypium raimondii)
WRKY**