Scas_Contig679.26 (Saccharomyces castellii)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 Scas_Contig679.26 T390704_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UPC2
M00920_2.00 		Saccharomyces cerevisiae
NTCGTWYVN
NBRWACGAN		 PBM
Gordan et al.(2011)
Upc2 		0.594 0.718
UPC2
M07508_2.00 		Saccharomyces cerevisiae
NRWACGA
TCGTWYN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0411.1 		0.594 0.718
UPC2
M08654_2.00 		Saccharomyces cerevisiae
NRWACGA
TCGTWYN		 Misc
DeBoer et al.(2011)
YDR213W_544 		0.594 0.718
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig679.26 Zinc cluster 56 95

Links

Other Zinc cluster family TFs
Other Saccharomyces castellii TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
augustus_masked-nMf.1.1.scaf03183-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf03183-processed-gene-0.0 N
augustus_masked-nMf.1.1.scaf07071-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf07071-processed-gene-0.0 N
augustus_masked-nMf.1.1.scaf07814-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf07814-processed-gene-0.0 N
augustus_masked-nMf.1.1.scaf08848-processed-gene-0.1 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf08848-processed-gene-0.1 N
genemark-nMf.1.1.scaf00124-processed-gene-0.5 Meloidogyne floridensis genemark-nMf.1.1.scaf00124-processed-gene-0.5 N
maker-nMf.1.1.scaf03855-augustus-gene-0.7 Meloidogyne floridensis maker-nMf.1.1.scaf03855-augustus-gene-0.7 N
maker-nMf.1.1.scaf08489-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf08489-snap-gene-0.4 N
maker-nMf.1.1.scaf08516-augustus-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf08516-augustus-gene-0.5 N
maker-nMf.1.1.scaf11243-snap-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf11243-snap-gene-0.6 N
MhA1_Contig311.frz3.gene3 Meloidogyne hapla MhA1_Contig311.frz3.gene3 N
Minc02822 Meloidogyne incognita Minc02822 N
Minc03112 Meloidogyne incognita Minc03112 N
Minc03113 Meloidogyne incognita Minc03113 N
Minc03116 Meloidogyne incognita Minc03116 N
Minc03122 Meloidogyne incognita Minc03122 N
Minc03124 Meloidogyne incognita Minc03124 N
Minc03125 Meloidogyne incognita Minc03125 N
Minc03951 Meloidogyne incognita Minc03951 N
Minc04628 Meloidogyne incognita Minc04628 N
Minc04734 Meloidogyne incognita Minc04734 N
Minc04767 Meloidogyne incognita Minc04767 N
Minc05938 Meloidogyne incognita Minc05938 N
Minc05939 Meloidogyne incognita Minc05939 N
Minc05946 Meloidogyne incognita Minc05946 N
Minc05948 Meloidogyne incognita Minc05948 N
Minc05953 Meloidogyne incognita Minc05953 N
Minc05954 Meloidogyne incognita Minc05954 N
Minc05955 Meloidogyne incognita Minc05955 N
Minc06648 Meloidogyne incognita Minc06648 N
Minc06656 Meloidogyne incognita Minc06656 N
Minc11357 Meloidogyne incognita Minc11357 N
Minc11359 Meloidogyne incognita Minc11359 N
Minc11361 Meloidogyne incognita Minc11361 N
Minc11362 Meloidogyne incognita Minc11362 N
Minc17472 Meloidogyne incognita Minc17472 N
Minc18240 Meloidogyne incognita Minc18240 N