Bo4g184540 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo4g184540 T000822_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.735 0.940
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.735 0.940
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.735 0.940
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.735 0.920
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.735 0.900
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.735 0.900
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.735 0.900
Q3HS42_BRANA
M09739_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII4_01 		0.693 0.880
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g184540.1 AP2 53 104

Links

Other AP2 family TFs
Other Brassica oleracea TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00119p00105590 Amborella trichopoda AMTR_s00119p00105590 I 0.000
AMTR_s00186p00015620 Amborella trichopoda AMTR_s00186p00015620 I 0.000
Aquca_022_00293 Aquilegia coerulea Aquca_022_00293 I 0.000
ATMYB54 Arabidopsis lyrata Al_scaffold_0002_2037 I 0.000
ATMYB69 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7000654 I 0.000
AtMYB56 Arabidopsis lyrata fgenesh2_kg.6__1780__AT5G17800.1 I 0.000
ATMYB52 Arabidopsis lyrata scaffold_102001.1 I 0.000
MYB52 Arabidopsis thaliana AT1G17950 D 0.000
ATMYB54 Arabidopsis thaliana AT1G73410 I 0.000
ATMYB69 Arabidopsis thaliana AT4G33450 I 0.000
MYB56 Arabidopsis thaliana AT5G17800 D 0.000
Bostr.10273s0016 Boechera stricta Bostr.10273s0016 I 0.000
Bostr.26527s0427 Boechera stricta Bostr.26527s0427 I 0.000
Bostr.7128s0403 Boechera stricta Bostr.7128s0403 I 0.000
Bostr.7867s1191 Boechera stricta Bostr.7867s1191 I 0.000
BRADI3G36740 Brachypodium distachyon BRADI3G36740 I 0.000
Bo1g008140 Brassica oleracea Bo1g008140 I 0.000
Bo2g080540 Brassica oleracea Bo2g080540 I 0.000
Bo3g012780 Brassica oleracea Bo3g012780 I 0.000
Bo3g170700 Brassica oleracea Bo3g170700 I 0.000
Bo6g116800 Brassica oleracea Bo6g116800 I 0.000
Bo8g067590 Brassica oleracea Bo8g067590 I 0.000
Bo8g104600 Brassica oleracea Bo8g104600 I 0.000
Bra006422 Brassica rapa Bra006422 I 0.000
Bra008096 Brassica rapa Bra008096 I 0.000
Bra011441 Brassica rapa Bra011441 I 0.000
Bra015992 Brassica rapa Bra015992 I 0.000
Bra016575 Brassica rapa Bra016575 I 0.000
Bra031008 Brassica rapa Bra031008 I 0.000
Bra034565 Brassica rapa Bra034565 I 0.000
Bra037004 Brassica rapa Bra037004 N 0.000
PK01212.1 Cannabis sativa PK01212.1 I 0.000
PK17670.1 Cannabis sativa PK17670.1 I 0.000
PK20989.1 Cannabis sativa PK20989.1 I 0.000
PK28773.1 Cannabis sativa PK28773.1 I 0.000
Cagra.0844s0037 Capsella grandiflora Cagra.0844s0037 I 0.000
Cagra.2175s0026 Capsella grandiflora Cagra.2175s0026 I 0.000
Cagra.4894s0009 Capsella grandiflora Cagra.4894s0009 I 0.000
Cagra.6254s0026 Capsella grandiflora Cagra.6254s0026 I 0.000
Carubv10001376m.g Capsella rubella Carubv10001376m.g I 0.000
Carubv10006783m.g Capsella rubella Carubv10006783m.g I 0.000
Carubv10012605m.g Capsella rubella Carubv10012605m.g I 0.000
Carubv10021434m.g Capsella rubella Carubv10021434m.g I 0.000
evm.TU.contig_27928.1 Carica papaya evm.TU.contig_27928.1 I 0.000
evm.TU.supercontig_480.4 Carica papaya evm.TU.supercontig_480.4 I 0.000
evm.TU.supercontig_7.125 Carica papaya evm.TU.supercontig_7.125 I 0.000
evm.TU.supercontig_73.4 Carica papaya evm.TU.supercontig_73.4 I 0.000
Ca_03919 Cicer arietinum Ca_03919 I 0.000
Ca_16374 Cicer arietinum Ca_16374 I 0.000
Cla000326 Citrullus lanatus Cla000326 I 0.000
Cla010359 Citrullus lanatus Cla010359 I 0.000
Cla014084 Citrullus lanatus Cla014084 I 0.000
Ciclev10001803m.g Citrus clementina Ciclev10001803m.g I 0.000
Ciclev10020631m.g Citrus clementina Ciclev10020631m.g I 0.000
Ciclev10021859m.g Citrus clementina Ciclev10021859m.g I 0.000
orange1.1g020106m.g Citrus sinensis orange1.1g020106m.g I 0.000
orange1.1g025697m.g Citrus sinensis orange1.1g025697m.g I 0.000
Cucsa.016540 Cucumis sativus Cucsa.016540 I 0.000
Cucsa.077160 Cucumis sativus Cucsa.077160 I 0.000
Cucsa.284980 Cucumis sativus Cucsa.284980 I 0.000
Thhalv10008597m.g Eutrema salsugineum Thhalv10008597m.g I 0.000
Thhalv10014113m.g Eutrema salsugineum Thhalv10014113m.g I 0.000
Thhalv10019669m.g Eutrema salsugineum Thhalv10019669m.g I 0.000
Thhalv10026063m.g Eutrema salsugineum Thhalv10026063m.g I 0.000
gene09311-v1.0-hybrid Fragaria vesca gene09311-v1.0-hybrid I 0.000
gene29254-v1.0-hybrid Fragaria vesca gene29254-v1.0-hybrid I 0.000
GLYMA01G05980 Glycine max GLYMA01G05980 I 0.000
GLYMA02G12105 Glycine max GLYMA02G12105 I 0.000
GLYMA03G00980 Glycine max GLYMA03G00980 I 0.000
GLYMA04G42110 Glycine max GLYMA04G42110 I 0.000
GLYMA06G12691 Glycine max GLYMA06G12691 I 0.000
GLYMA07G35581 Glycine max GLYMA07G35581 I 0.000
GLYMA20G04511 Glycine max GLYMA20G04511 I 0.000
Gorai.007G002200 Gossypium raimondii Gorai.007G002200 I 0.000
Gorai.008G293100 Gossypium raimondii Gorai.008G293100 I 0.000
Gorai.009G251700 Gossypium raimondii Gorai.009G251700 I 0.000
Gorai.013G106600 Gossypium raimondii Gorai.013G106600 I 0.000
LPERR01G10360 Leersia perrieri LPERR01G10360 I 0.000
LPERR08G13020 Leersia perrieri LPERR08G13020 I 0.000
Lus10031326.g Linum usitatissimum Lus10031326.g I 0.000
Lus10031900.g Linum usitatissimum Lus10031900.g I 0.000
chr2.CM0641.440.nd Lotus japonicus chr2.CM0641.440.nd I 0.000
MDP0000136541 Malus domestica MDP0000136541 I 0.000
MDP0000146675 Malus domestica MDP0000146675 I 0.000
MDP0000172476 Malus domestica MDP0000172476 I 0.000
MDP0000265114 Malus domestica MDP0000265114 I 0.000
MDP0000291518 Malus domestica MDP0000291518 I 0.000
MDP0000755899 Malus domestica MDP0000755899 I 0.000
MDP0000852158 Malus domestica MDP0000852158 I 0.000
MDP0000878006 Malus domestica MDP0000878006 I 0.000
cassava12378.valid.m1 Manihot esculenta cassava12378.valid.m1 I 0.000
cassava25953.m1 Manihot esculenta cassava25953.m1 I 0.000
cassava3020.m1 Manihot esculenta cassava3020.m1 I 0.000
cassava5849.m1 Manihot esculenta cassava5849.m1 I 0.000
cassava9262.m1 Manihot esculenta cassava9262.m1 I 0.000
MTR_3g089045 Medicago truncatula MTR_3g089045 I 0.000
MTR_4g082040 Medicago truncatula MTR_4g082040 I 0.000
MTR_5g041570 Medicago truncatula MTR_5g041570 I 0.000
mgf006675m Mimulus guttatus mgf006675m I 0.000
mgf018311m Mimulus guttatus mgf018311m I 0.000
GSMUA_Achr10G05080_001 Musa acuminata GSMUA_Achr10G05080_001 I 0.000
GSMUA_Achr10G12830_001 Musa acuminata GSMUA_Achr10G12830_001 I 0.000
GSMUA_Achr3G07700_001 Musa acuminata GSMUA_Achr3G07700_001 I 0.000
GSMUA_Achr3G16490_001 Musa acuminata GSMUA_Achr3G16490_001 I 0.000
GSMUA_Achr6G32250_001 Musa acuminata GSMUA_Achr6G32250_001 I 0.000
GSMUA_Achr9G04990_001 Musa acuminata GSMUA_Achr9G04990_001 I 0.000
GSMUA_Achr9G08480_001 Musa acuminata GSMUA_Achr9G08480_001 I 0.000
GSMUA_Achr9G15750_001 Musa acuminata GSMUA_Achr9G15750_001 I 0.000
OBART08G15790 Oryza barthii OBART08G15790 I 0.000
OB08G23250 Oryza brachyantha OB08G23250 I 0.000
ORGLA08G0138700 Oryza glaberrima ORGLA08G0138700 I 0.000
OGLUM01G12520 Oryza glumaepatula OGLUM01G12520 I 0.000
OGLUM08G16550 Oryza glumaepatula OGLUM08G16550 I 0.000
BGIOSGA028724 Oryza indica BGIOSGA028724 I 0.000
OMERI01G10960 Oryza meridionalis OMERI01G10960 I 0.000
OMERI08G13100 Oryza meridionalis OMERI08G13100 I 0.000
ONIVA01G13400 Oryza nivara ONIVA01G13400 I 0.000
ONIVA08G17040 Oryza nivara ONIVA08G17040 I 0.000
OPUNC01G10870 Oryza punctata OPUNC01G10870 I 0.000
OPUNC08G13850 Oryza punctata OPUNC08G13850 I 0.000
ORUFI01G12050 Oryza rufipogon ORUFI01G12050 I 0.000
ORUFI08G17710 Oryza rufipogon ORUFI08G17710 I 0.000
OS01G0274800 Oryza sativa OS01G0274800 I 0.000
OS08G0435700 Oryza sativa OS08G0435700 I 0.000
Pavir.Ea01097 Panicum virgatum Pavir.Ea01097 I 0.000
Pavir.Fa00885 Panicum virgatum Pavir.Fa00885 I 0.000
Pavir.Fb01599 Panicum virgatum Pavir.Fb01599 I 0.000
Pavir.Hb01200 Panicum virgatum Pavir.Hb01200 I 0.000
Pavir.J04678 Panicum virgatum Pavir.J04678 I 0.000
Pavir.J16832 Panicum virgatum Pavir.J16832 I 0.000
Pavir.J21755 Panicum virgatum Pavir.J21755 I 0.000
Pavir.J31094 Panicum virgatum Pavir.J31094 I 0.000
PDK_20s1366461g001 Phoenix dactylifera PDK_20s1366461g001 I 0.000
PDK_20s1619721g001 Phoenix dactylifera PDK_20s1619721g001 I 0.000
PDK_20s1649141g001 Phoenix dactylifera PDK_20s1649141g001 I 0.000
e_gw1.219.38.1 Physcomitrella patens e_gw1.219.38.1 I 0.000
e_gw1.91.11.1 Physcomitrella patens e_gw1.91.11.1 I 0.000
gw1.200.30.1 Physcomitrella patens gw1.200.30.1 I 0.000
gw1.2.29.1 Physcomitrella patens gw1.2.29.1 I 0.000
gw1.76.8.1 Physcomitrella patens gw1.76.8.1 I 0.000
POPTR_0005s06410 Populus trichocarpa POPTR_0005s06410 I 0.000
POPTR_0005s20870 Populus trichocarpa POPTR_0005s20870 I 0.000
POPTR_0007s01430 Populus trichocarpa POPTR_0007s01430 I 0.000
POPTR_0007s04140 Populus trichocarpa POPTR_0007s04140 I 0.000
POPTR_0012s03650 Populus trichocarpa POPTR_0012s03650 I 0.000
POPTR_0013s06320 Populus trichocarpa POPTR_0013s06320 I 0.000
POPTR_0015s05130 Populus trichocarpa POPTR_0015s05130 I 0.000
POPTR_0019s05740 Populus trichocarpa POPTR_0019s05740 I 0.000
Pm022705 Prunus mume Pm022705 I 0.000
Pm025457 Prunus mume Pm025457 I 0.000
PRUPE_ppa006434mg Prunus persica PRUPE_ppa006434mg I 0.000
PRUPE_ppa016398mg Prunus persica PRUPE_ppa016398mg I 0.000
PRUPE_ppa021779mg Prunus persica PRUPE_ppa021779mg I 0.000
28838.m000246 Ricinus communis 28838.m000246 I 0.000
30000.m000380 Ricinus communis 30000.m000380 I 0.000
30137.m000436 Ricinus communis 30137.m000436 I 0.000
SapurV1A.0074s0390 Salix purpurea SapurV1A.0074s0390 I 0.000
SapurV1A.0118s0380 Salix purpurea SapurV1A.0118s0380 I 0.000
SapurV1A.0171s0440 Salix purpurea SapurV1A.0171s0440 I 0.000
SapurV1A.0916s0130 Salix purpurea SapurV1A.0916s0130 I 0.000
SapurV1A.1092s0010 Salix purpurea SapurV1A.1092s0010 I 0.000
SapurV1A.1416s0010 Salix purpurea SapurV1A.1416s0010 I 0.000
SapurV1A.1601s0030 Salix purpurea SapurV1A.1601s0030 I 0.000
SapurV1A.1660s0020 Salix purpurea SapurV1A.1660s0020 I 0.000
SapurV1A.1664s0020 Salix purpurea SapurV1A.1664s0020 I 0.000
SapurV1A.2371s0030 Salix purpurea SapurV1A.2371s0030 I 0.000
SapurV1A.3733s0010 Salix purpurea SapurV1A.3733s0010 I 0.000
SELMODRAFT_38644 Selaginella moellendorffii SELMODRAFT_38644 I 0.000
SELMODRAFT_6091 Selaginella moellendorffii SELMODRAFT_6091 I 0.000
SELMODRAFT_6100 Selaginella moellendorffii SELMODRAFT_6100 I 0.000
SELMODRAFT_8484 Selaginella moellendorffii SELMODRAFT_8484 I 0.000
Si004691m.g Setaria italica Si004691m.g I 0.000
Si005038m.g Setaria italica Si005038m.g I 0.000
Si011791m.g Setaria italica Si011791m.g I 0.000
Si026751m.g Setaria italica Si026751m.g I 0.000
Solyc04g064540.2 Solanum lycopersicum Solyc04g064540.2 I 0.000
Solyc10g081320.1 Solanum lycopersicum Solyc10g081320.1 I 0.000
PGSC0003DMG400024822 Solanum tuberosum PGSC0003DMG400024822 I 0.000
PGSC0003DMG400028119 Solanum tuberosum PGSC0003DMG400028119 I 0.000
PGSC0003DMG400031044 Solanum tuberosum PGSC0003DMG400031044 I 0.000
Sb03g010960 Sorghum bicolor Sb03g010960 I 0.000
Sb03g010970 Sorghum bicolor Sb03g010970 I 0.000
Sb05g009460 Sorghum bicolor Sb05g009460 I 0.000
Sb07g021280 Sorghum bicolor Sb07g021280 I 0.000
TCM_001496 Theobroma cacao TCM_001496 I 0.000
TCM_013357 Theobroma cacao TCM_013357 I 0.000
TCM_035359 Theobroma cacao TCM_035359 I 0.000
ATMYB69 Vitis vinifera VIT_04s0044g01380 I 0.000
ATMYB52 Vitis vinifera VIT_17s0000g01890 I 0.000
GRMZM2G111731 Zea mays GRMZM2G111731 I 0.000
GRMZM2G312419 Zea mays GRMZM2G312419 I 0.000
GRMZM2G428555 Zea mays GRMZM2G428555 I 0.000