Bo6g077880 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo6g077880 T000864_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.684 0.725
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.684 0.725
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.684 0.725
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.677 0.725
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo6g077880.1 AP2 102 153

Links

Other AP2 family TFs
Other Brassica oleracea TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRF3 Arabidopsis lyrata scaffold_801806.1 I 0.677
CRF4 Arabidopsis lyrata scaffold_701473.1 I 0.685
CRF6 Arabidopsis lyrata fgenesh2_kg.5__2643__AT3G61630.1 I 0.713
CRF5 Arabidopsis lyrata fgenesh2_kg.4__2841__AT2G46310.1 I 0.738
CRF6 Arabidopsis thaliana AT3G61630 I 0.703
CRF4 Arabidopsis thaliana AT4G27950 D 0.684
CRF3 Arabidopsis thaliana AT5G53290 D 0.677
CRF5 Arabidopsis thaliana AT2G46310 I 0.732
Bostr.26833s0952 Boechera stricta Bostr.26833s0952 I 0.677
Bostr.25993s0138 Boechera stricta Bostr.25993s0138 I 0.731
Bostr.13158s0163 Boechera stricta Bostr.13158s0163 I 0.762
BRADI1G04110 Brachypodium distachyon BRADI1G04110 N 0.726
Bo9g111050 Brassica oleracea Bo9g111050 I 0.677
Bo2g045930 Brassica oleracea Bo2g045930 I 0.677
Bra022643 Brassica rapa Bra022643 I 0.677
Bra003462 Brassica rapa Bra003462 I 0.826
Bra003068 Brassica rapa Bra003068 I 0.677
Cagra.1225s0103 Capsella grandiflora Cagra.1225s0103 I 0.684
Cagra.0483s0087 Capsella grandiflora Cagra.0483s0087 I 0.753
Cagra.0084s0074 Capsella grandiflora Cagra.0084s0074 I 0.677
Cagra.0050s0068 Capsella grandiflora Cagra.0050s0068 I 0.731
Carubv10023769m.g Capsella rubella Carubv10023769m.g I 0.731
Carubv10017705m.g Capsella rubella Carubv10017705m.g I 0.753
Carubv10005229m.g Capsella rubella Carubv10005229m.g I 0.684
Carubv10026682m.g Capsella rubella Carubv10026682m.g I 0.677
Cla000729 Citrullus lanatus Cla000729 I 0.702
Thhalv10001561m.g Eutrema salsugineum Thhalv10001561m.g I 0.718
Thhalv10013898m.g Eutrema salsugineum Thhalv10013898m.g I 0.677
GLYMA14G38610 Glycine max GLYMA14G38610 I 0.701
Gorai.001G156900 Gossypium raimondii Gorai.001G156900 I 0.691
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.687
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.696
LjSGA_008718.1 Lotus japonicus LjSGA_008718.1 I 0.679
GSMUA_Achr9G19330_001 Musa acuminata GSMUA_Achr9G19330_001 N 0.707
GSMUA_Achr5G26850_001 Musa acuminata GSMUA_Achr5G26850_001 I 0.697
GSMUA_Achr1G23090_001 Musa acuminata GSMUA_Achr1G23090_001 N 0.709
PRUPE_ppa018978mg Prunus persica PRUPE_ppa018978mg N 0.731
TCM_005203 Theobroma cacao TCM_005203 I 0.697
Traes_5BL_C94A0F1D4 Triticum aestivum Traes_5BL_C94A0F1D4 N 0.678