Bra003462 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra003462 T000999_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.684 0.740
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.684 0.740
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.684 0.740
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.677 0.740
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra003462.1-P AP2 101 152

Links

Other AP2 family TFs
Other Brassica rapa TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRF3 Arabidopsis lyrata scaffold_801806.1 I 0.677
CRF4 Arabidopsis lyrata scaffold_701473.1 I 0.685
CRF6 Arabidopsis lyrata fgenesh2_kg.5__2643__AT3G61630.1 I 0.713
CRF5 Arabidopsis lyrata fgenesh2_kg.4__2841__AT2G46310.1 I 0.738
CRF6 Arabidopsis thaliana AT3G61630 I 0.703
CRF4 Arabidopsis thaliana AT4G27950 D 0.684
CRF3 Arabidopsis thaliana AT5G53290 D 0.677
CRF5 Arabidopsis thaliana AT2G46310 I 0.732
Bostr.26833s0952 Boechera stricta Bostr.26833s0952 I 0.677
Bostr.25993s0138 Boechera stricta Bostr.25993s0138 I 0.731
Bostr.13158s0163 Boechera stricta Bostr.13158s0163 I 0.762
BRADI1G04110 Brachypodium distachyon BRADI1G04110 N 0.726
Bo9g111050 Brassica oleracea Bo9g111050 I 0.677
Bo6g077880 Brassica oleracea Bo6g077880 I 0.826
Bo2g045930 Brassica oleracea Bo2g045930 I 0.677
Bra022643 Brassica rapa Bra022643 I 0.677
Bra003068 Brassica rapa Bra003068 I 0.677
Cagra.1225s0103 Capsella grandiflora Cagra.1225s0103 I 0.684
Cagra.0483s0087 Capsella grandiflora Cagra.0483s0087 I 0.753
Cagra.0084s0074 Capsella grandiflora Cagra.0084s0074 I 0.677
Cagra.0050s0068 Capsella grandiflora Cagra.0050s0068 I 0.731
Carubv10023769m.g Capsella rubella Carubv10023769m.g I 0.731
Carubv10017705m.g Capsella rubella Carubv10017705m.g I 0.753
Carubv10005229m.g Capsella rubella Carubv10005229m.g I 0.684
Carubv10026682m.g Capsella rubella Carubv10026682m.g I 0.677
Cla000729 Citrullus lanatus Cla000729 I 0.702
Thhalv10001561m.g Eutrema salsugineum Thhalv10001561m.g I 0.718
Thhalv10013898m.g Eutrema salsugineum Thhalv10013898m.g I 0.677
GLYMA14G38610 Glycine max GLYMA14G38610 I 0.701
Gorai.001G156900 Gossypium raimondii Gorai.001G156900 I 0.691
Gorai.007G105600 Gossypium raimondii Gorai.007G105600 I 0.687
Gorai.007G105700 Gossypium raimondii Gorai.007G105700 I 0.696
LjSGA_008718.1 Lotus japonicus LjSGA_008718.1 I 0.679
GSMUA_Achr9G19330_001 Musa acuminata GSMUA_Achr9G19330_001 N 0.707
GSMUA_Achr5G26850_001 Musa acuminata GSMUA_Achr5G26850_001 I 0.697
GSMUA_Achr1G23090_001 Musa acuminata GSMUA_Achr1G23090_001 N 0.709
PRUPE_ppa018978mg Prunus persica PRUPE_ppa018978mg N 0.731
TCM_005203 Theobroma cacao TCM_005203 I 0.697
Traes_5BL_C94A0F1D4 Triticum aestivum Traes_5BL_C94A0F1D4 N 0.678