CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bra017493 *(Brassica rapa)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	Bra017493	T001107_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.870	0.941
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.870	0.941
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.870	0.941
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.828	0.843
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.821	0.843
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.807	0.784
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.807	0.784
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.799	0.784
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.799	0.784
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.799	0.784
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.769	0.804
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.760	0.745
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.742	0.765
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.742	0.765
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.742	0.686
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.737	0.725
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.732	0.725
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.732	0.725
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.732	0.725
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.729	0.686
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.729	0.706
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.728	0.667
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.716	0.765
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.716	0.765
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.709	0.647
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.707	0.765
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.707	0.765
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.707	0.765
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.697	0.686
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.694	0.686
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.694	0.686
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.692	0.608
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.692	0.686
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.692	0.686
ERF1B M01619_2.00	Arabidopsis thaliana	NMGCCGCCRN	NYGGCGGCKN	PBM Weirauch et al.(2014) pTH8795	0.691	0.765
ERF1B M06626_2.00	Arabidopsis thaliana	NHNNHDYMGCCGCCRYHDNHDNNNNNNN	NNNNNNNHDNHDRYGGCGGCKRHDNNDN	Dap-seq OMalley et al.(2016) ERF1_col_a	0.691	0.765
ERF1B M06627_2.00	Arabidopsis thaliana	MGCCGCCD	HGGCGGCK	Dap-seq OMalley et al.(2016) ERF1_colamp_a	0.691	0.765
ERF1B M09703_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2_01	0.691	0.765
ERF1B M09704_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_Q2	0.691	0.765
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.690	0.706
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.689	0.686
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.687	0.686
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.687	0.667
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.683	0.647
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.681	0.706
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.681	0.706
ERF15 M00718_2.00	Arabidopsis thaliana	NGSCGSCB	VGSCGSCN	PBM Chang et al.(2013) pTH7336	0.679	0.725
ERF15 M06604_2.00	Arabidopsis thaliana	NNNHNNHDBMGCCGCCDY	RHGGCGGCKVHDNNDNNN	Dap-seq OMalley et al.(2016) ERF15_colamp_a	0.679	0.725
ERF15 M06605_2.00	Arabidopsis thaliana	NNYHDYMGCCGCCRY	RYGGCGGCKRHDRNN	Dap-seq OMalley et al.(2016) ERF15_col	0.679	0.725
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.678	0.667
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.678	0.667
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.678	0.745
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bra017493.1-P	AP2	148	200	KHYRGVRQRPWGKFAAEIRDPNKRGSRIWLGTFDSAIEAARAYDQAAFRLRGS

Links
Other AP2 family TFs
Other *Brassica rapa* TFs

1522 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aquca_047_00006	Aquilegia coerulea	Aquca_047_00006	I	0.000
Aquca_015_00090	Aquilegia coerulea	Aquca_015_00090	I	0.000
Aquca_015_00088	Aquilegia coerulea	Aquca_015_00088	I	0.000
ATMYB90	Arabidopsis lyrata	scaffold_201358.1	I	0.000
scaffold_201357.1	Arabidopsis lyrata	scaffold_201357.1	I	0.000
MYB113	Arabidopsis lyrata	fgenesh2_kg.2__869__AT1G66370.1	I	0.000
PAP1	Arabidopsis lyrata	fgenesh2_kg.1__4777__AT1G56650.1	I	0.000
fgenesh1_pg.C_scaffold_2000950	Arabidopsis lyrata	fgenesh1_pg.C_scaffold_2000950	I	0.000
MYB113	Arabidopsis thaliana	AT1G66370	D	0.000
MYB75	Arabidopsis thaliana	AT1G56650	I	0.000
MYB90	Arabidopsis thaliana	AT1G66390	I	0.000
MYB114	Arabidopsis thaliana	AT1G66380	I	0.000
Bostr.26959s0279	Boechera stricta	Bostr.26959s0279	I	0.000
Bo00835s060	Brassica oleracea	Bo00835s060	I	0.000
Bo6g099880	Brassica oleracea	Bo6g099880	I	0.000
Bo6g100940	Brassica oleracea	Bo6g100940	I	0.000
Bra004162	Brassica rapa	Bra004162	I	0.000
Bra001917	Brassica rapa	Bra001917	I	0.000
Bra039763	Brassica rapa	Bra039763	I	0.000
PK05760.1	Cannabis sativa	PK05760.1	I	0.000
PK17827.1	Cannabis sativa	PK17827.1	I	0.000
Cagra.2400s0001	Capsella grandiflora	Cagra.2400s0001	I	0.000
Cagra.0463s0008	Capsella grandiflora	Cagra.0463s0008	I	0.000
Cagra.0463s0007	Capsella grandiflora	Cagra.0463s0007	I	0.000
Cagra.2629s0007	Capsella grandiflora	Cagra.2629s0007	I	0.000
Carubv10020856m.g	Capsella rubella	Carubv10020856m.g	I	0.000
Ca_19630	Cicer arietinum	Ca_19630	I	0.000
Ca_22078	Cicer arietinum	Ca_22078	I	0.000
Ciclev10013455m.g	Citrus clementina	Ciclev10013455m.g	I	0.000
Eucgr.J01573	Eucalyptus grandis	Eucgr.J01573	I	0.000
Eucgr.J01569	Eucalyptus grandis	Eucgr.J01569	I	0.000
Eucgr.J01555	Eucalyptus grandis	Eucgr.J01555	I	0.000
Eucgr.J01553	Eucalyptus grandis	Eucgr.J01553	I	0.000
Eucgr.H04157	Eucalyptus grandis	Eucgr.H04157	I	0.000
Eucgr.J01586	Eucalyptus grandis	Eucgr.J01586	I	0.000
Eucgr.J01580	Eucalyptus grandis	Eucgr.J01580	I	0.000
Eucgr.J01576	Eucalyptus grandis	Eucgr.J01576	I	0.000
Eucgr.J01574	Eucalyptus grandis	Eucgr.J01574	I	0.000
Eucgr.F02842	Eucalyptus grandis	Eucgr.F02842	I	0.000
Thhalv10019041m.g	Eutrema salsugineum	Thhalv10019041m.g	I	0.000
gene31413-v1.0-hybrid	Fragaria vesca	gene31413-v1.0-hybrid	I	0.000
GLYMA07G16980	Glycine max	GLYMA07G16980	I	0.000
GLYMA09G36966	Glycine max	GLYMA09G36966	I	0.000
GLYMA09G36983	Glycine max	GLYMA09G36983	I	0.000
GLYMA09G37010	Glycine max	GLYMA09G37010	I	0.000
GLYMA18G41520	Glycine max	GLYMA18G41520	I	0.000
GLYMA18G49670	Glycine max	GLYMA18G49670	I	0.000
GLYMA18G49690	Glycine max	GLYMA18G49690	I	0.000
GLYMA19G02980	Glycine max	GLYMA19G02980	I	0.000
Gorai.013G118300	Gossypium raimondii	Gorai.013G118300	I	0.000
Gorai.007G268800	Gossypium raimondii	Gorai.007G268800	I	0.000
Gorai.001G087400	Gossypium raimondii	Gorai.001G087400	I	0.000
Gorai.001G087200	Gossypium raimondii	Gorai.001G087200	I	0.000
Lus10042522.g	Linum usitatissimum	Lus10042522.g	I	0.000
Lus10028514.g	Linum usitatissimum	Lus10028514.g	I	0.000
Lus10028513.g	Linum usitatissimum	Lus10028513.g	I	0.000
Lus10009130.g	Linum usitatissimum	Lus10009130.g	I	0.000
Lus10009129.g	Linum usitatissimum	Lus10009129.g	I	0.000
chr1.CM0141.350.nd	Lotus japonicus	chr1.CM0141.350.nd	I	0.000
chr1.LjT44L17.240.nd	Lotus japonicus	chr1.LjT44L17.240.nd	I	0.000
MTR_0197s0010	Medicago truncatula	MTR_0197s0010	I	0.000
MTR_8g060940	Medicago truncatula	MTR_8g060940	I	0.000
MTR_7g017260	Medicago truncatula	MTR_7g017260	I	0.000
MTR_0001s0360	Medicago truncatula	MTR_0001s0360	I	0.000
MTR_5g079290	Medicago truncatula	MTR_5g079290	I	0.000
MTR_5g078800	Medicago truncatula	MTR_5g078800	I	0.000
MTR_5g078860	Medicago truncatula	MTR_5g078860	I	0.000
MTR_5g078910	Medicago truncatula	MTR_5g078910	I	0.000
MTR_5g078930	Medicago truncatula	MTR_5g078930	I	0.000
MTR_5g079120	Medicago truncatula	MTR_5g079120	I	0.000
MTR_5g079220	Medicago truncatula	MTR_5g079220	I	0.000
mgf019317m	Mimulus guttatus	mgf019317m	I	0.000
PDK_20s1447601g001	Phoenix dactylifera	PDK_20s1447601g001	I	0.000
POPTR_0005s14460	Populus trichocarpa	POPTR_0005s14460	I	0.000
POPTR_0005s14470	Populus trichocarpa	POPTR_0005s14470	I	0.000
POPTR_0005s14490	Populus trichocarpa	POPTR_0005s14490	I	0.000
Pm029445	Prunus mume	Pm029445	I	0.000
Pm029442	Prunus mume	Pm029442	I	0.000
Pm029440	Prunus mume	Pm029440	I	0.000
PRUPE_ppa026640mg	Prunus persica	PRUPE_ppa026640mg	I	0.000
27763.m000042	Ricinus communis	27763.m000042	I	0.000
30128.m008730	Ricinus communis	30128.m008730	I	0.000
SapurV1A.0230s0240	Salix purpurea	SapurV1A.0230s0240	I	0.000
SapurV1A.0230s0250	Salix purpurea	SapurV1A.0230s0250	I	0.000
SapurV1A.0230s0260	Salix purpurea	SapurV1A.0230s0260	I	0.000
Solyc10g086290.1	Solanum lycopersicum	Solyc10g086290.1	I	0.000
Solyc10g086270.1	Solanum lycopersicum	Solyc10g086270.1	I	0.000
Solyc10g086260.1	Solanum lycopersicum	Solyc10g086260.1	I	0.000
Solyc10g086250.1	Solanum lycopersicum	Solyc10g086250.1	I	0.000
TCM_026054	Theobroma cacao	TCM_026054	I	0.000
TCM_019192	Theobroma cacao	TCM_019192	I	0.000
VIT_02s0033g00410	Vitis vinifera	VIT_02s0033g00410	I	0.000
VIT_02s0033g00400	Vitis vinifera	VIT_02s0033g00400	I	0.000
VIT_02s0033g00430	Vitis vinifera	VIT_02s0033g00430	I	0.000
VIT_02s0033g00450	Vitis vinifera	VIT_02s0033g00450	I	0.000
VIT_14s0006g01290	Vitis vinifera	VIT_14s0006g01290	I	0.000

Bra017493 (Brassica rapa) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1522 Related TFs

Bra017493 **(Brassica rapa)
AP2**