OBART06G05300 (Oryza barthii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OBART06G05300 T003136_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF003
M06667_2.00 		Arabidopsis thaliana
DYCDCCRCCGYMDHHDYHN
NDRHDDHKRCGGYGGHGRH		 Dap-seq
OMalley et al.(2016)
ESE3_col_a 		0.852 0.961
ERF003
M06668_2.00 		Arabidopsis thaliana
HDYCKCCGCCGYHDH
DHDRCGGCGGMGRHD		 Dap-seq
OMalley et al.(2016)
ESE3_colamp_a 		0.852 0.961
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.722 0.804
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART06G05300.1 AP2 6 57

Links

Other AP2 family TFs
Other Oryza barthii TFs

295 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I 0.000
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I 0.000
scaffold_402920.1 Arabidopsis lyrata scaffold_402920.1 N 0.000
fgenesh2_kg.5__2108__AT3G56770.1 Arabidopsis lyrata fgenesh2_kg.5__2108__AT3G56770.1 N 0.000
BHLH106 Arabidopsis thaliana AT2G41130 N 0.000
Bostr.20505s0075 Boechera stricta Bostr.20505s0075 N 0.000
Bostr.9345s0019 Boechera stricta Bostr.9345s0019 N 0.000
BRADI1G04280 Brachypodium distachyon BRADI1G04280 N 0.000
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N 0.000
Bo3g035410 Brassica oleracea Bo3g035410 N 0.000
Bo4g012960 Brassica oleracea Bo4g012960 N 0.000
Bo4g112750 Brassica oleracea Bo4g112750 N 0.000
Bo4g190700 Brassica oleracea Bo4g190700 N 0.000
Bra016951 Brassica rapa Bra016951 N 0.000
Bra014672 Brassica rapa Bra014672 N 0.000
Bra004599 Brassica rapa Bra004599 N 0.000
PK23387.1 Cannabis sativa PK23387.1 N 0.000
Cagra.1642s0077 Capsella grandiflora Cagra.1642s0077 N 0.000
Cagra.0578s0007 Capsella grandiflora Cagra.0578s0007 N 0.000
Carubv10023903m.g Capsella rubella Carubv10023903m.g N 0.000
Carubv10017947m.g Capsella rubella Carubv10017947m.g N 0.000
evm.TU.supercontig_92.83 Carica papaya evm.TU.supercontig_92.83 N 0.000
Ca_07159 Cicer arietinum Ca_07159 N 0.000
Cla017413 Citrullus lanatus Cla017413 N 0.000
Cla019977 Citrullus lanatus Cla019977 I 0.000
Ciclev10012626m.g Citrus clementina Ciclev10012626m.g N 0.000
orange1.1g026479m.g Citrus sinensis orange1.1g026479m.g N 0.000
Cucsa.340200 Cucumis sativus Cucsa.340200 N 0.000
Cucsa.213230 Cucumis sativus Cucsa.213230 I 0.000
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I 0.000
Eucgr.A02230 Eucalyptus grandis Eucgr.A02230 N 0.000
Thhalv10006410m.g Eutrema salsugineum Thhalv10006410m.g N 0.000
Thhalv10017546m.g Eutrema salsugineum Thhalv10017546m.g N 0.000
gene14814-v1.0-hybrid Fragaria vesca gene14814-v1.0-hybrid N 0.000
GLYMA02G23590 Glycine max GLYMA02G23590 N 0.000
GLYMA19G30910 Glycine max GLYMA19G30910 N 0.000
GLYMA03G28150 Glycine max GLYMA03G28150 N 0.000
Gorai.007G352300 Gossypium raimondii Gorai.007G352300 N 0.000
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I 0.000
Lus10018020.g Linum usitatissimum Lus10018020.g N 0.000
Lus10042017.g Linum usitatissimum Lus10042017.g N 0.000
chr1.CM0816.330.nc Lotus japonicus chr1.CM0816.330.nc N 0.000
MDP0000249969 Malus domestica MDP0000249969 I 0.000
MDP0000213892 Malus domestica MDP0000213892 N 0.000
MDP0000138102 Malus domestica MDP0000138102 N 0.000
cassava7163.valid.m1 Manihot esculenta cassava7163.valid.m1 N 0.000
cassava32077.m1 Manihot esculenta cassava32077.m1 I 0.000
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I 0.000
mgf009382m Mimulus guttatus mgf009382m N 0.000
GSMUA_Achr8G23980_001 Musa acuminata GSMUA_Achr8G23980_001 N 0.000
ORGLA03G0352000 Oryza glaberrima ORGLA03G0352000 N 0.000
OS03G0811400 Oryza sativa OS03G0811400 N 0.000
Pavir.J24868 Panicum virgatum Pavir.J24868 N 0.000
Pavir.J02699 Panicum virgatum Pavir.J02699 N 0.000
POPTR_0006s03550 Populus trichocarpa POPTR_0006s03550 N 0.000
POPTR_0016s03460 Populus trichocarpa POPTR_0016s03460 N 0.000
Pm025589 Prunus mume Pm025589 N 0.000
PRUPE_ppa011532mg Prunus persica PRUPE_ppa011532mg N 0.000
30180.m001071 Ricinus communis 30180.m001071 N 0.000
SapurV1A.0159s0020 Salix purpurea SapurV1A.0159s0020 N 0.000
SapurV1A.0189s0140 Salix purpurea SapurV1A.0189s0140 N 0.000
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I 0.000
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I 0.000
Solyc10g078380.1 Solanum lycopersicum Solyc10g078380.1 N 0.000
PGSC0003DMG400008378 Solanum tuberosum PGSC0003DMG400008378 N 0.000
Sb01g003830 Sorghum bicolor Sb01g003830 N 0.000
TCM_024016 Theobroma cacao TCM_024016 N 0.000
TCM_029711 Theobroma cacao TCM_029711 I 0.000
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I 0.000
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I 0.000
GRMZM2G027068 Zea mays GRMZM2G027068 N 0.000