PGSC0003DMG400034739 (Solanum tuberosum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 PGSC0003DMG400034739 T004494_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
abi4
M02648_2.00 		Zea mays
CGSYGCYBYB
VRVRGCRSCG		 SELEX
Mathelier et al.(2014)
MA0123.1 		0.793 0.900
abi4
M09706_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ABI4_01 		0.793 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400085168 AP2 45 96

Links

Other AP2 family TFs
Other Solanum tuberosum TFs

57 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
maker-nMf.1.1.scaf11763-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf11763-augustus-gene-0.3 N
augustus_masked-nMf.1.1.scaf06920-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf06920-processed-gene-0.0 N
augustus_masked-nMf.1.1.scaf10396-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf10396-processed-gene-0.0 N
maker-nMf.1.1.scaf00198-snap-gene-0.24 Meloidogyne floridensis maker-nMf.1.1.scaf00198-snap-gene-0.24 N
maker-nMf.1.1.scaf03265-augustus-gene-0.7 Meloidogyne floridensis maker-nMf.1.1.scaf03265-augustus-gene-0.7 N
maker-nMf.1.1.scaf04006-snap-gene-0.9 Meloidogyne floridensis maker-nMf.1.1.scaf04006-snap-gene-0.9 N
maker-nMf.1.1.scaf06148-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf06148-augustus-gene-0.3 N
maker-nMf.1.1.scaf06196-snap-gene-0.8 Meloidogyne floridensis maker-nMf.1.1.scaf06196-snap-gene-0.8 N
maker-nMf.1.1.scaf06884-augustus-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf06884-augustus-gene-0.5 N
maker-nMf.1.1.scaf08255-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf08255-snap-gene-0.4 N
maker-nMf.1.1.scaf14574-augustus-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf14574-augustus-gene-0.4 N
maker-nMf.1.1.scaf15444-snap-gene-0.4 Meloidogyne floridensis maker-nMf.1.1.scaf15444-snap-gene-0.4 N
MhA1_Contig988.frz3.gene1 Meloidogyne hapla MhA1_Contig988.frz3.gene1 N
MhA1_Contig1386.frz3.gene10 Meloidogyne hapla MhA1_Contig1386.frz3.gene10 N
MhA1_Contig2339.frz3.gene1 Meloidogyne hapla MhA1_Contig2339.frz3.gene1 N
MhA1_Contig2339.frz3.gene2 Meloidogyne hapla MhA1_Contig2339.frz3.gene2 N
MhA1_Contig392.frz3.gene14 Meloidogyne hapla MhA1_Contig392.frz3.gene14 N
MhA1_Contig41.frz3.gene12 Meloidogyne hapla MhA1_Contig41.frz3.gene12 N
MhA1_Contig790.frz3.gene5 Meloidogyne hapla MhA1_Contig790.frz3.gene5 N
Minc09143 Meloidogyne incognita Minc09143 N
Minc02054 Meloidogyne incognita Minc02054 N
Minc02055 Meloidogyne incognita Minc02055 N
Minc03976 Meloidogyne incognita Minc03976 N
Minc04725 Meloidogyne incognita Minc04725 N
Minc07962 Meloidogyne incognita Minc07962 N
Minc07964 Meloidogyne incognita Minc07964 N
Minc09140 Meloidogyne incognita Minc09140 N
Minc09142 Meloidogyne incognita Minc09142 N
Minc18991 Meloidogyne incognita Minc18991 N
Minc13321 Meloidogyne incognita Minc13321 N
Minc13448 Meloidogyne incognita Minc13448 N
Minc14854 Meloidogyne incognita Minc14854 N
Minc15187 Meloidogyne incognita Minc15187 N
Minc15189 Meloidogyne incognita Minc15189 N
Minc17464 Meloidogyne incognita Minc17464 N
Minc17667 Meloidogyne incognita Minc17667 N
Minc18661 Meloidogyne incognita Minc18661 N