POPTR_0008s11900 (Populus trichocarpa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 POPTR_0008s11900 T004679_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.712 0.796
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.712 0.796
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.712 0.796
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0008s11900.1 AP2 88 139

Links

Other AP2 family TFs
Other Populus trichocarpa TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh2_kg.2__1107__AT1G68550.2 Arabidopsis lyrata fgenesh2_kg.2__1107__AT1G68550.2 I 0.680
ERF118 Arabidopsis thaliana AT1G68550 D 0.712
Thhalv10019722m.g Eutrema salsugineum Thhalv10019722m.g I 0.701
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.677
GLYMA20G24920 Glycine max GLYMA20G24920 I 0.678
Gorai.008G183300 Gossypium raimondii Gorai.008G183300 I 0.714
Lus10021678.g Linum usitatissimum Lus10021678.g I 0.684
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.679
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.679
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.679
cassava43300.valid.m1 Manihot esculenta cassava43300.valid.m1 I 0.794
cassava35758.valid.m1 Manihot esculenta cassava35758.valid.m1 I 0.786
cassava35757.valid.m1 Manihot esculenta cassava35757.valid.m1 I 0.786
POPTR_0010s13540 Populus trichocarpa POPTR_0010s13540 I 0.787
27524.m000298 Ricinus communis 27524.m000298 I 0.794
SapurV1A.0078s0470 Salix purpurea SapurV1A.0078s0470 I 0.787
SapurV1A.0079s0190 Salix purpurea SapurV1A.0079s0190 I 0.811
TCM_011811 Theobroma cacao TCM_011811 I 0.714
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.689