scaffold_700899.1 (Arabidopsis lyrata)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 scaffold_700899.1 T005112_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF043
M01627_2.00 		Arabidopsis thaliana
YRCCGACA
TGTCGGYR		 PBM
Weirauch et al.(2014)
pTH7413 		0.820 1.000
ERF043
M06651_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNN
NNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_colamp_a 		0.820 1.000
ERF043
M06652_2.00 		Arabidopsis thaliana
NNYCACCGACANHNNH
DNNDNTGTCGGTGRNN		 Dap-seq
OMalley et al.(2016)
At4g32800_col 		0.820 1.000
ERF034
M06614_2.00 		Arabidopsis thaliana
NHNYCACCGACANHD
HDNTGTCGGTGRNDN		 Dap-seq
OMalley et al.(2016)
At2g44940_col_a 		0.788 0.900
ERF034
M06615_2.00 		Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN		 Dap-seq
OMalley et al.(2016)
At2g44940_colamp_a 		0.788 0.900
ERF035
M06631_2.00 		Arabidopsis thaliana
YCACCGACANWDNH
DNHWNTGTCGGTGR		 Dap-seq
OMalley et al.(2016)
AT3G60490_col_a 		0.774 0.860
ERF035
M06632_2.00 		Arabidopsis thaliana
NNBCACCGACAHWNNN
NNNWDTGTCGGTGVNN		 Dap-seq
OMalley et al.(2016)
AT3G60490_colamp_a 		0.774 0.860
Q8LKX0_MAIZE
M09722_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DBF2_01 		0.748 0.860
AT3G16280
M06618_2.00 		Arabidopsis thaliana
NDNCACCGACANHN
NDNTGTCGGTGNHN		 Dap-seq
OMalley et al.(2016)
AT3G16280_col_a 		0.739 0.840
AT3G16280
M06619_2.00 		Arabidopsis thaliana
BCACCGACAHWNNN
NNNWDTGTCGGTGV		 Dap-seq
OMalley et al.(2016)
AT3G16280_colamp_a 		0.739 0.840
TINY
M01094_2.00 		Arabidopsis thaliana
NHRCCGACAN
NTGTCGGYDN		 PBM
Lambert et al.(2019)
pTH11541 		0.711 0.880
TINY
M06669_2.00 		Arabidopsis thaliana
HNYCRCCGACANHDN
NHDNTGTCGGYGRND		 Dap-seq
OMalley et al.(2016)
TINY_col_a 		0.711 0.880
ERF037
M00843_2.00 		Arabidopsis thaliana
NRCCGACRN
NYGTCGGYN		 PBM
Franco-Zorrilla et al.(2014)
At1g77200 		0.710 0.860
ERF037
M06599_2.00 		Arabidopsis thaliana
YCRCCGACAHHNNH
DNNDDTGTCGGYGR		 Dap-seq
OMalley et al.(2016)
AT1G77200_col_a 		0.710 0.860
ERF037
M06600_2.00 		Arabidopsis thaliana
NNYACCGACAHN
NDTGTCGGTRNN		 Dap-seq
OMalley et al.(2016)
AT1G77200_colamp_a 		0.710 0.860
Q5MAR7_BRANA
M09742_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII1_01 		0.709 0.840
Q3HS44_BRANA
M09741_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII2_01 		0.709 0.840
Q3HS43_BRANA
M09740_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBIII3_01 		0.709 0.840
ERF039
M01620_2.00 		Arabidopsis thaliana
NNRCCGACDN
NHGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH8101 		0.699 0.840
ERF039
M06635_2.00 		Arabidopsis thaliana
HNNHDYCRCCGMCRN
NYGKCGGYGRHDNND		 Dap-seq
OMalley et al.(2016)
At4g16750_col_a 		0.699 0.840
ERF039
M06636_2.00 		Arabidopsis thaliana
NNNNNNYCACCGACAHH
DDTGTCGGTGRNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g16750_colamp_a 		0.699 0.840
ERF038
M06608_2.00 		Arabidopsis thaliana
NHNHHDYCRCCGACA
TGTCGGYGRHDDNDN		 Dap-seq
OMalley et al.(2016)
ERF38_col_a 		0.699 0.820
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_700899.1 AP2 17 68

Links

Other AP2 family TFs
Other Arabidopsis lyrata TFs

457 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL011926 Aedes aegypti AAEL011926 I 0.000
ENSAMEG00000004326 Ailuropoda melanoleuca ENSAMEG00000004326 I 0.000
Alligator_sinensis_CCG010779.1 Alligator sinensis Alligator_sinensis_CCG010779.1 I 0.000
Alligator_sinensis_CCG010961.2 Alligator sinensis Alligator_sinensis_CCG010961.2 I 0.000
Alligator_sinensis_CCG019781.1 Alligator sinensis Alligator_sinensis_CCG019781.1 I 0.000
ENSAPLG00000010506 Anas platyrhynchos ENSAPLG00000010506 I 0.000
T Anolis carolinensis ENSACAG00000003467 I 0.000
TBX19 Anolis carolinensis ENSACAG00000010693 I 0.000
AALB003755 Anopheles albimanus AALB003755 I 0.000
AARA000721 Anopheles arabiensis AARA000721 I 0.000
ACOM032190 Anopheles coluzzii ACOM032190 I 0.000
ACUA027826 Anopheles culicifacies ACUA027826 I 0.000
ADAC000433 Anopheles darlingi ADAC000433 I 0.000
ADIR001942 Anopheles dirus ADIR001942 I 0.000
AEPI011219 Anopheles epiroticus AEPI011219 I 0.000
AFUN010277 Anopheles funestus AFUN010277 I 0.000
AGAP011927 Anopheles gambiae AGAP011927 I 0.000
AMEC020399 Anopheles melas AMEC020399 I 0.000
AMIN008605 Anopheles minimus AMIN008605 I 0.000
AQUA010101 Anopheles quadriannulatus AQUA010101 I 0.000
ASIS006984 Anopheles sinensis ASIS006984 I 0.000
ASTEI05115 Anopheles stephensi ASTEI05115 I 0.000
GB51013 Apis mellifera GB51013 I 0.000
Afo_R013116 Aptenodytes forsteri Afo_R013116 I 0.000
ENSAMXG00000003991 Astyanax mexicanus ENSAMXG00000003991 I 0.000
BGIBMGA000322 Bombyx mori BGIBMGA000322 I 0.000
ENSP00000356795-D1 Bos grunniens ENSP00000356795-D1 I 0.000
TBX19 Bos taurus ENSBTAG00000002952 I 0.000
T Bos taurus ENSBTAG00000018681 I 0.000
estExt_fgenesh2_pg.C_650149 Branchiostoma floridae estExt_fgenesh2_pg.C_650149 I 0.000
estExt_GenewiseH_1.C_9340011 Branchiostoma floridae estExt_GenewiseH_1.C_9340011 I 0.000
estExt_gwp.C_650221 Branchiostoma floridae estExt_gwp.C_650221 I 0.000
estExt_gwp.C_9340008 Branchiostoma floridae estExt_gwp.C_9340008 I 0.000
Brh_R012030 Buceros rhinoceros Brh_R012030 I 0.000
T Callithrix jacchus ENSCJAG00000012508 I 0.000
TBX19 Callithrix jacchus ENSCJAG00000016812 I 0.000
Aan_R012309 Calypte anna Aan_R012309 I 0.000
Cflo_04209--XP_396427.2_APIME Camponotus floridanus Cflo_04209--XP_396427.2_APIME I 0.000
T Canis familiaris ENSCAFG00000000807 I 0.000
TBX19 Canis familiaris ENSCAFG00000015268 I 0.000
T Cavia porcellus ENSCPOG00000001358 I 0.000
TBX19 Cavia porcellus ENSCPOG00000012456 I 0.000
Cmyd_10017804 Chelonia mydas Cmyd_10017804 I 0.000
Cmyd_10020966 Chelonia mydas Cmyd_10020966 I 0.000
ENSCSAG00000011055 Chlorocebus sabaeus ENSCSAG00000011055 I 0.000
ENSCSAG00000012200 Chlorocebus sabaeus ENSCSAG00000012200 I 0.000
TBX19 Choloepus hoffmanni ENSCHOG00000010387 I 0.000
CLEC002870 Cimex lectularius CLEC002870 I 0.000
brachyury Ciona intestinalis ENSCING00000000810 I 0.000
ENSCSAVG00000002247 Ciona savignyi ENSCSAVG00000002247 I 0.000
CGI_10018059 Crassostrea gigas CGI_10018059 I 0.000
CpipJ_CPIJ011372 Culex pipiens CpipJ_CPIJ011372 I 0.000
tb Danio rerio ENSDARG00000039806 I 0.000
tbx19 Danio rerio ENSDARG00000079187 I 0.000
DAPPUDRAFT_44582 Daphnia pulex DAPPUDRAFT_44582 I 0.000
TBX19 Dasypus novemcinctus ENSDNOG00000015810 I 0.000
ENSDNOG00000016178 Dasypus novemcinctus ENSDNOG00000016178 I 0.000
Tbx19 Dipodomys ordii ENSDORG00000014860 I 0.000
GF25302 Drosophila ananassae FBgn0102294 I 0.000
GG15542 Drosophila erecta FBgn0107790 I 0.000
GH14805 Drosophila grimshawi FBgn0122281 I 0.000
byn Drosophila melanogaster FBgn0011723 D 0.000
GI11508 Drosophila mojavensis FBgn0134268 I 0.000
GL25108 Drosophila persimilis FBgn0162695 I 0.000
GA20217 Drosophila pseudoobscura FBgn0080212 I 0.000
GM25308 Drosophila sechellia FBgn0180168 I 0.000
GD14339 Drosophila simulans FBgn0186024 I 0.000
GJ13700 Drosophila virilis FBgn0200921 I 0.000
GK25266 Drosophila willistoni FBgn0227225 I 0.000
GE21864 Drosophila yakuba FBgn0239106 I 0.000
T Equus caballus ENSECAG00000007994 I 0.000
TBX19 Equus caballus ENSECAG00000010186 I 0.000
TBX19 Felis catus ENSFCAG00000015047 I 0.000
ENSFALG00000005706 Ficedula albicollis ENSFALG00000005706 I 0.000
ENSGMOG00000017391 Gadus morhua ENSGMOG00000017391 I 0.000
T Gallus gallus ENSGALG00000011489 I 0.000
TBX19 Gallus gallus ENSGALG00000015244 I 0.000
tb Gasterosteus aculeatus ENSGACG00000005258 I 0.000
Gfo_R000170 Geospiza fortis Gfo_R000170 I 0.000
TBX19 Gorilla gorilla ENSGGOG00000001338 I 0.000
T Gorilla gorilla ENSGGOG00000007693 I 0.000
Hsal_03707--XP_396427.2_APIME Harpegnathos saltator Hsal_03707--XP_396427.2_APIME I 0.000
TBX19 Homo sapiens ENSG00000143178 D 0.000
T Homo sapiens ENSG00000164458 D 0.000
XP_002154016.1 Hydra magnipapillata XP_002154016.1 I 0.000
XP_002164912.1 Hydra magnipapillata XP_002164912.1 I 0.000
ENSSTOG00000019913 Ictidomys tridecemlineatus ENSSTOG00000019913 I 0.000
ENSSTOG00000028238 Ictidomys tridecemlineatus ENSSTOG00000028238 I 0.000
ENSLACG00000011042 Latimeria chalumnae ENSLACG00000011042 I 0.000
ENSLACG00000015449 Latimeria chalumnae ENSLACG00000015449 I 0.000
ENSLOCG00000003838 Lepisosteus oculatus ENSLOCG00000003838 I 0.000
ENSLOCG00000010586 Lepisosteus oculatus ENSLOCG00000010586 I 0.000
ENSLOCG00000016526 Lepisosteus oculatus ENSLOCG00000016526 I 0.000
LotgiG154800 Lottia gigantea LotgiG154800 I 0.000
TBX19 Loxodonta africana ENSLAFG00000011227 I 0.000
T Loxodonta africana ENSLAFG00000012505 I 0.000
LCUP008716 Lucilia cuprina LCUP008716 I 0.000
ENSMMUP00000022430 Macaca fascicularis ENSMMUP00000022430 I 0.000
ENSP00000356795 Macaca fascicularis ENSP00000356795 I 0.000
SFT2D2 Macaca mulatta ENSMMUG00000005283 I 0.000
T Macaca mulatta ENSMMUG00000017047 I 0.000
MCINX002868 Melitaea cinxia MCINX002868 I 0.000
TBX19 Microcebus murinus ENSMICG00000007817 I 0.000
ML174736a Mnemiopsis leidyi ML174736a I 0.000
TBX19 Monodelphis domestica ENSMODG00000002921 I 0.000
T Monodelphis domestica ENSMODG00000006318 I 0.000
MDOA012486 Musca domestica MDOA012486 I 0.000
ENSMPUG00000000522 Mustela putorius furo ENSMPUG00000000522 I 0.000
Tbx19 Mus musculus ENSMUSG00000026572 I 0.000
T Mus musculus ENSMUSG00000062327 D 0.000
Myotis_brandtii_TBX19_10024384 Myotis brandtii Myotis_brandtii_TBX19_10024384 I 0.000
TBX19 Myotis lucifugus ENSMLUG00000011933 I 0.000
NV14821 Nasonia vitripennis NV14821 I 0.000
ENSNLEG00000011552 Nomascus leucogenys ENSNLEG00000011552 I 0.000
ENSNLEG00000014917 Nomascus leucogenys ENSNLEG00000014917 I 0.000
T Ochotona princeps ENSOPRG00000003376 I 0.000
TBX19 Ochotona princeps ENSOPRG00000016564 I 0.000
SNAPOd2T00000418001 Oikopleura dioica SNAPOd2T00000418001 I 0.000
Ogr19099 Ophisaurus gracilis Ogr19099 I 0.000
ENSONIG00000008985 Oreochromis niloticus ENSONIG00000008985 I 0.000
ENSONIG00000009906 Oreochromis niloticus ENSONIG00000009906 I 0.000
T Ornithorhynchus anatinus ENSOANG00000012289 I 0.000
T Oryctolagus cuniculus ENSOCUG00000000660 I 0.000
TBX19 Oryctolagus cuniculus ENSOCUG00000014555 I 0.000
tb Oryzias latipes ENSORLG00000011262 I 0.000
TBX19 Otolemur garnettii ENSOGAG00000004458 I 0.000
T Otolemur garnettii ENSOGAG00000007863 I 0.000
ENSOARG00000004863 Ovis aries ENSOARG00000004863 I 0.000
ENSOARG00000012617 Ovis aries ENSOARG00000012617 I 0.000
TBX19 Pan troglodytes ENSPTRG00000001647 I 0.000
T Pan troglodytes ENSPTRG00000018789 I 0.000
ENSPANG00000005068 Papio anubis ENSPANG00000005068 I 0.000
PHUM392580 Pediculus humanus PHUM392580 I 0.000
ENSPSIG00000005649 Pelodiscus sinensis ENSPSIG00000005649 I 0.000
ENSPSIG00000015509 Pelodiscus sinensis ENSPSIG00000015509 I 0.000
ENSPFOG00000006034 Poecilia formosa ENSPFOG00000006034 I 0.000
ENSPFOG00000016071 Poecilia formosa ENSPFOG00000016071 I 0.000
Pvit_02210 Pogona vitticeps Pvit_02210 I 0.000
Pvit_04554 Pogona vitticeps Pvit_04554 I 0.000
ENSPPYG00000017163 Pongo abelii ENSPPYG00000017163 I 0.000
T Rattus norvegicus ENSRNOG00000012229 I 0.000
RPRC001186 Rhodnius prolixus RPRC001186 I 0.000
ENSSHAG00000018904 Sarcophilus harrisii ENSSHAG00000018904 I 0.000
ENSSHAG00000018940 Sarcophilus harrisii ENSSHAG00000018940 I 0.000
TBX19 Sus scrofa ENSSSCG00000006299 I 0.000
T Taeniopygia guttata ENSTGUG00000009448 I 0.000
TBX19 Taeniopygia guttata ENSTGUG00000013434 I 0.000
tbx19 Takifugu rubripes ENSTRUG00000005718 I 0.000
tb Takifugu rubripes ENSTRUG00000011958 I 0.000
tbx19 Tetraodon nigroviridis ENSTNIG00000006586 I 0.000
tb Tetraodon nigroviridis ENSTNIG00000016613 I 0.000
TC014076 Tribolium castaneum TC014076 I 0.000
TriadG25521 Trichoplax adhaerens TriadG25521 I 0.000
T Tursiops truncatus ENSTTRG00000016665 I 0.000
TBX19 Vicugna pacos ENSVPAG00000000446 I 0.000
1XBR_A Xenopus laevis 1XBR_A I 0.000
1XBR_B Xenopus laevis 1XBR_B I 0.000
t2.S Xenopus laevis XB-GENE-5981788 I 0.000
tbxt.L Xenopus laevis XB-GENE-6255736 I 0.000
tbxt.S Xenopus laevis XB-GENE-865212 I 0.000
tbxt Xenopus tropicalis XB-GENE-478789 I 0.000
t2 Xenopus tropicalis XB-GENE-5981736 I 0.000
ENSXMAG00000006226 Xiphophorus maculatus ENSXMAG00000006226 I 0.000
ENSXMAG00000011123 Xiphophorus maculatus ENSXMAG00000011123 I 0.000