cassava6588.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava6588.valid.m1 T006969_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF3
M01607_2.00 		Arabidopsis thaliana
CGCCGSCR
YGSCGGCG		 PBM
Weirauch et al.(2014)
pTH8109 		0.680 0.830
ERF3
M06584_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
ERF3_col_a 		0.680 0.830
ERF3
M06585_2.00 		Arabidopsis thaliana
NNHHDNHNNYDCCGCCGYCR
YGRCGGCGGHRNNDNHDDNN		 Dap-seq
OMalley et al.(2016)
ERF3_colamp_a 		0.680 0.830
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava6588.valid.m1 AP2 34 85

Links

Other AP2 family TFs
Other Manihot esculenta TFs

69 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00077p00176570 Amborella trichopoda AMTR_s00077p00176570 I 0.706
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I 0.704
ERF3 Arabidopsis thaliana AT1G50640 D 0.680
Bo6g022410 Brassica oleracea Bo6g022410 I 0.682
PK25211.1 Cannabis sativa PK25211.1 I 0.707
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I 0.681
Carubv10010284m.g Capsella rubella Carubv10010284m.g I 0.681
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I 0.718
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I 0.702
Cla013723 Citrullus lanatus Cla013723 I 0.681
Cla005423 Citrullus lanatus Cla005423 I 0.707
Cla003319 Citrullus lanatus Cla003319 I 0.711
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I 0.714
Ciclev10022025m.g Citrus clementina Ciclev10022025m.g I 0.697
Ciclev10009361m.g Citrus clementina Ciclev10009361m.g I 0.710
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I 0.714
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I 0.710
orange1.1g047100m.g Citrus sinensis orange1.1g047100m.g I 0.697
Cucsa.042770 Cucumis sativus Cucsa.042770 I 0.699
Cucsa.190200 Cucumis sativus Cucsa.190200 I 0.711
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I 0.691
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I 0.688
gene01152-v1.0-hybrid Fragaria vesca gene01152-v1.0-hybrid I 0.715
GLYMA14G05470 Glycine max GLYMA14G05470 I 0.679
GLYMA02G43500 Glycine max GLYMA02G43500 I 0.679
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I 0.680
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I 0.694
Lus10029987.g Linum usitatissimum Lus10029987.g I 0.684
Lus10031526.g Linum usitatissimum Lus10031526.g I 0.692
Lus10035329.g Linum usitatissimum Lus10035329.g I 0.684
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I 0.692
MDP0000907929 Malus domestica MDP0000907929 I 0.681
MDP0000839828 Malus domestica MDP0000839828 I 0.715
MDP0000744693 Malus domestica MDP0000744693 I 0.678
MDP0000629527 Malus domestica MDP0000629527 I 0.699
MDP0000542633 Malus domestica MDP0000542633 I 0.699
MDP0000457509 Malus domestica MDP0000457509 I 0.689
MDP0000317950 Malus domestica MDP0000317950 I 0.682
MDP0000310904 Malus domestica MDP0000310904 I 0.679
MDP0000243113 Malus domestica MDP0000243113 I 0.678
MDP0000236605 Malus domestica MDP0000236605 I 0.679
MDP0000189033 Malus domestica MDP0000189033 I 0.681
MDP0000153445 Malus domestica MDP0000153445 I 0.682
MDP0000133485 Malus domestica MDP0000133485 I 0.681
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I 0.696
mgf016282m Mimulus guttatus mgf016282m I 0.715
mgf007166m Mimulus guttatus mgf007166m I 0.714
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I 0.700
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I 0.697
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I 0.710
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I 0.692
GSMUA_Achr1G18230_001 Musa acuminata GSMUA_Achr1G18230_001 I 0.720
gw1.105.71.1 Physcomitrella patens gw1.105.71.1 I 0.742
POPTR_0001s36610 Populus trichocarpa POPTR_0001s36610 I 0.702
Pm011907 Prunus mume Pm011907 I 0.699
Pm014953 Prunus mume Pm014953 I 0.715
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I 0.696
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I 0.715
29640.m000403 Ricinus communis 29640.m000403 I 0.701
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I 0.701
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I 0.701
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I 0.704
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I 0.707
Solyc04g051360.2 Solanum lycopersicum Solyc04g051360.2 I 0.678
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I 0.699
PGSC0003DMG400014417 Solanum tuberosum PGSC0003DMG400014417 I 0.695
TCM_030804 Theobroma cacao TCM_030804 I 0.698
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I 0.696
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I 0.714