CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

fgenesh1_pm.chr_4_#_35 *(Ostreococcus RCC809)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	fgenesh1_pm.chr_4_#_35	T007240_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.782	0.837
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.782	0.837
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.779	0.837
0100010458 M01644_2.00	Ostreococcus tauri	MGCCGSCR	YGSCGGCK	PBM Weirauch et al.(2014) pTH9447	0.753	0.837
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.751	0.776
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.746	0.735
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.746	0.755
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.728	0.796
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.725	0.714
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.720	0.735
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.714	0.714
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.714	0.714
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.714	0.755
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.714	0.755
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.714	0.755
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.714	0.735
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.714	0.735
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.714	0.735
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.713	0.714
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.713	0.714
HRE1 M06595_2.00	Arabidopsis thaliana	NHNBMDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHKVNDN	Dap-seq OMalley et al.(2016) ERF73_col_a	0.712	0.714
HRE1 M06596_2.00	Arabidopsis thaliana	HNYHDMHNYCDCCGCCGCCRY	RYGGCGGCGGHGRNDKHDRND	Dap-seq OMalley et al.(2016) ERF73_colamp_a	0.712	0.714
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.708	0.714
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.707	0.714
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.707	0.714
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.707	0.714
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.704	0.694
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.704	0.694
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.703	0.694
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.703	0.714
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.696	0.714
ERF091 M06638_2.00	Arabidopsis thaliana	NNHNYHDCCGCCGCCRY	RYGGCGGCGGHDRNDNN	Dap-seq OMalley et al.(2016) AT4G18450_col_a	0.694	0.714
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.692	0.673
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.690	0.714
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.690	0.714
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.690	0.714
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.690	0.714
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.690	0.714
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.689	0.714
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.689	0.714
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.689	0.714
LEP M06661_2.00	Arabidopsis thaliana	NBCKCCGCCGYHDHHDYHNHH	DDNDRHDDHDRCGGCGGMGVN	Dap-seq OMalley et al.(2016) LEP_col_a	0.687	0.673
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.686	0.714
ERF3 M01607_2.00	Arabidopsis thaliana	CGCCGSCR	YGSCGGCG	PBM Weirauch et al.(2014) pTH8109	0.686	0.673
ERF3 M06584_2.00	Arabidopsis thaliana	YHDYCKCCGCCGYHD	HDRCGGCGGMGRHDR	Dap-seq OMalley et al.(2016) ERF3_col_a	0.686	0.673
ERF3 M06585_2.00	Arabidopsis thaliana	NNHHDNHNNYDCCGCCGYCR	YGRCGGCGGHRNNDNHDDNN	Dap-seq OMalley et al.(2016) ERF3_colamp_a	0.686	0.673
ERF8 M01608_2.00	Arabidopsis thaliana	MGCCGNMNNN	NNNKNCGGCK	PBM Weirauch et al.(2014) pTH8095	0.684	0.714
ERF8 M06586_2.00	Arabidopsis thaliana	NYHDYCKCCGCCGYH	DRCGGCGGMGRHDRN	Dap-seq OMalley et al.(2016) ERF8_col_a	0.684	0.714
ERF8 M06587_2.00	Arabidopsis thaliana	HNNHDSCGCCGYCRHHDN	NHDDYGRCGGCGSHDNND	Dap-seq OMalley et al.(2016) ERF8_colamp_a	0.684	0.714
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.684	0.714
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.684	0.714
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.683	0.776
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.683	0.776
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh1_pm.chr_4_#_35	AP2	33	84	SQYRGVRQRPWGSWAAEIRDPNRGARLWLGTFDTAEEAARAYDAAARHIRGP

Links
Other AP2 family TFs
Other *Ostreococcus RCC809* TFs

1686 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AB05299.1	Alternaria brassicicola	AB05299.1	I
AOL_s00097g406	Arthrobotrys oligospora	AOL_s00097g406	I
MCYG_00067	Arthroderma otae	MCYG_00067	I
fgenesh1_pm.00042_#_359	Aspergillus carbonarius	fgenesh1_pm.00042_#_359	I
CADAFLAG00001126	Aspergillus flavus	CADAFLAG00001126	I
ANIA_00928	Aspergillus nidulans	CADANIAG00001727	D
CADANGAG00001424	Aspergillus niger	CADANGAG00001424	I
EURHEDRAFT_408126	Aspergillus ruber	EURHEDRAFT_408126	I
ATEG_05199	Aspergillus terreus	CADATEAG00005112	I
M437DRAFT_69925	Aureobasidium melanogenum	M437DRAFT_69925	I
M438DRAFT_354976	Aureobasidium pullulans	M438DRAFT_354976	I
AUEXF2481DRAFT_6834	Aureobasidium subglaciale	AUEXF2481DRAFT_6834	I
BAUCODRAFT_78015	Baudoinia compniacensis	BAUCODRAFT_78015	I
COCC4DRAFT_176529	Bipolaris maydis	COCC4DRAFT_176529	I
COCMIDRAFT_84450	Bipolaris oryzae	COCMIDRAFT_84450	I
COCSADRAFT_266185	Bipolaris sorokiniana	COCSADRAFT_266185	I
COCVIDRAFT_14051	Bipolaris victoriae	COCVIDRAFT_14051	I
COCCADRAFT_31801	Bipolaris zeicola	COCCADRAFT_31801	I
A1O1_02181	Capronia coronata	A1O1_02181	I
PV04_08584	Capronia semiimmersa	PV04_08584	I
G647_07030	Cladophialophora carrionii	G647_07030	I
PV07_01284	Cladophialophora immunda	PV07_01284	I
A1O5_08472	Cladophialophora psammophila	A1O5_08472	I
A1O7_08064	Cladophialophora yegresii	A1O7_08064	I
CPC735_010610	Coccidioides posadasii	CPC735_010610	I
estExt_Genewise1Plus.C_80383	Cochliobolus heterostrophus C5	estExt_Genewise1Plus.C_80383	I
CGGC5_2292	Colletotrichum gloeosporioides	CGGC5_2292	I
CH063_14565	Colletotrichum higginsianum	CH063_14565	I
CSUB01_07393	Colletotrichum sublineola	CSUB01_07393	I
W97_01407	Coniosporium apollinis	W97_01407	I
CCM_05638	Cordyceps militaris	CCM_05638	I
H072_4801	Dactylellina haptotyla	H072_4801	I
DOTSEDRAFT_69884	Dothistroma septosporum	DOTSEDRAFT_69884	I
EV44_g3230	Erysiphe necator	EV44_g3230	I
A1O9_08153	Exophiala aquamarina	A1O9_08153	I
HMPREF1120_02532	Exophiala dermatitidis	HMPREF1120_02532	I
PV05_01128	Exophiala xenobiotica	PV05_01128	I
CMQ_6218	Grosmannia clavigera	CMQ_6218	I
HCBG_01324	Histoplasma capsulatum	HCBG_01324	I
LEMA_P088770.1	Leptosphaeria maculans	LEMA_P088770.1	I
MPH_10551	Macrophomina phaseolina	MPH_10551	I
MCYG_00067	Microsporum canis	MCYG_00067	I
MGYG_07139	Microsporum gypseum	MGYG_07139	I
estExt_Genewise1Plus.C_140773	Mycosphaerella fijiensis	estExt_Genewise1Plus.C_140773	I
estExt_Genewise1Plus.C_chr_20926	Mycosphaerella graminicola	estExt_Genewise1Plus.C_chr_20926	I
UCRNP2_1469	Neofusicoccum parvum	UCRNP2_1469	I
PABG_06059	Paracoccidioides brasiliensis	PABG_06059	I
PAAG_05307	Paracoccidioides sp lutzii	PAAG_05307	I
Pc16g14610	Penicillium chrysogenum	Pc16g14610	I
PDIP_65580	Penicillium digitatum	PDIP_65580	I
PEX1_005990	Penicillium expansum	PEX1_005990	I
PITC_097670	Penicillium italicum	PITC_097670	I
PDE_00510	Penicillium oxalicum	PDE_00510	I
PCH_Pc16g14610	Penicillium rubens	PCH_Pc16g14610	I
U727_00430440431	Penicillium solitum	U727_00430440431	I
SNOG_02470	Phaeosphaeria nodorum	SNOG_02470	I
MYCFIDRAFT_210457	Pseudocercospora fijiensis	MYCFIDRAFT_210457	I
GMDG_03846	Pseudogymnoascus destructans	GMDG_03846	N
V499_08420	Pseudogymnoascus pannorum	V499_08420	N
PTT_02242	Pyrenophora teres	PTT_02242	I
PTRG_10554	Pyrenophora triticirepentis	PTRG_10554	I
SETTUDRAFT_32470	Setosphaeria turcica	SETTUDRAFT_32470	I
SMAC_02549	Sordaria macrospora	SMAC_02549	I
SEPMUDRAFT_123488	Sphaerulina musiva	SEPMUDRAFT_123488	I
SNOG_02470	Stagonospora nodorum	SNOG_02470	I
VHEMI02370	Torrubiella hemipterigena	VHEMI02370	I
VHEMI02535	Torrubiella hemipterigena	VHEMI02535	I
H101_06251	Trichophyton interdigitale	H101_06251	I
H102_00463	Trichophyton rubrum	H102_00463	I
H105_00452	Trichophyton soudanense	H105_00452	I
TESG_03220	Trichophyton tonsurans	TESG_03220	I
GSTUM_00002996001	Tuber melanosporum	GSTUM_00002996001	I
UREG_02875	Uncinocarpus reesii	UREG_02875	I
UV8b_6280	Ustilaginoidea virens	UV8b_6280	I
PV09_08665	Verruconis gallopava	PV09_08665	I
Mycgr3G68239	Zymoseptoria tritici	Mycgr3G68239	I

fgenesh1_pm.chr_4_#_35 (Ostreococcus RCC809) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1686 Related TFs

fgenesh1_pm.chr_4_#_35 **(Ostreococcus RCC809)
AP2**