Carubv10002733m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10002733m.g T007821_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-11
M06665_2.00 		Arabidopsis thaliana
NNNYHDYYGCCGBCN
NGVCGGCRRHDRNNN		 Dap-seq
OMalley et al.(2016)
RAP211_col_a 		0.832 1.000
RAP2-11
M06666_2.00 		Arabidopsis thaliana
HNNNGCCGGCSDNND
HNNHSGCCGGCNNND		 Dap-seq
OMalley et al.(2016)
RAP211_colamp_a 		0.832 1.000
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10002733m AP2 20 71

Links

Other AP2 family TFs
Other Capsella rubella TFs

253 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02727 Aegilops tauschii F775_02727 I 0.796
F775_04303 Aegilops tauschii F775_04303 I 0.757
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.683
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.702
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.757
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.826
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.725
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.794
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.827
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.679
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.716
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.832
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.832
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.832
BRADI1G23756 Brachypodium distachyon BRADI1G23756 I 0.722
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.768
Bo2g018360 Brassica oleracea Bo2g018360 I 0.832
Bo3g013830 Brassica oleracea Bo3g013830 I 0.832
Bo9g152440 Brassica oleracea Bo9g152440 I 0.832
Bra002262 Brassica rapa Bra002262 I 0.832
Bra006518 Brassica rapa Bra006518 I 0.832
Bra020063 Brassica rapa Bra020063 I 0.832
PK13330.1 Cannabis sativa PK13330.1 I 0.796
PK25269.1 Cannabis sativa PK25269.1 I 0.735
PK28640.1 Cannabis sativa PK28640.1 I 0.687
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.832
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.796
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.702
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.831
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.681
Ca_00417 Cicer arietinum Ca_00417 I 0.697
Ca_08232 Cicer arietinum Ca_08232 I 0.831
Ca_10494 Cicer arietinum Ca_10494 I 0.796
Ca_16397 Cicer arietinum Ca_16397 I 0.703
Ca_25424 Cicer arietinum Ca_25424 I 0.706
Cla010474 Citrullus lanatus Cla010474 I 0.799
Cla012318 Citrullus lanatus Cla012318 I 0.817
Cla021590 Citrullus lanatus Cla021590 I 0.730
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.796
Ciclev10018044m.g Citrus clementina Ciclev10018044m.g I 0.698
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.818
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.686
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.724
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.794
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.686
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.818
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.724
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.818
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.794
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.796
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.746
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.799
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.730
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.817
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.823
Eucgr.B00666 Eucalyptus grandis Eucgr.B00666 I 0.694
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.817
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.778
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.832
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.796
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.827
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.724
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.817
GLYMA02G08020 Glycine max GLYMA02G08020 I 0.734
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.703
GLYMA05G07690 Glycine max GLYMA05G07690 I 0.678
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.703
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.796
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.831
GLYMA16G27040 Glycine max GLYMA16G27040 I 0.734
GLYMA17G13320 Glycine max GLYMA17G13320 I 0.678
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.805
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.796
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.796
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.831
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.796
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.745
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.724
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.758
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.686
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.784
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.831
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.780
MLOC_69002 Hordeum vulgare MLOC_69002 I 0.716
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.796
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.831
LPERR07G17030 Leersia perrieri LPERR07G17030 I 0.733
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.710
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.765
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.799
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.818
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.799
Lus10013614.g Linum usitatissimum Lus10013614.g I 0.773
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.746
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.782
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.724
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.790
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.790
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.748
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.724
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.831
MDP0000128326 Malus domestica MDP0000128326 I 0.764
MDP0000133476 Malus domestica MDP0000133476 I 0.724
MDP0000138669 Malus domestica MDP0000138669 I 0.724
MDP0000157628 Malus domestica MDP0000157628 I 0.705
MDP0000172804 Malus domestica MDP0000172804 I 0.685
MDP0000177547 Malus domestica MDP0000177547 I 0.831
MDP0000197375 Malus domestica MDP0000197375 I 0.705
MDP0000276536 Malus domestica MDP0000276536 I 0.796
MDP0000525933 Malus domestica MDP0000525933 I 0.781
MDP0000551969 Malus domestica MDP0000551969 I 0.796
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.799
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.824
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.718
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.724
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.714
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.794
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.792
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.821
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.726
cassava9887.m1 Manihot esculenta cassava9887.m1 I 0.726
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.704
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.796
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.737
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.794
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.831
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.703
mgf018851m Mimulus guttatus mgf018851m I 0.724
mgf022665m Mimulus guttatus mgf022665m I 0.828
mgf022810m Mimulus guttatus mgf022810m I 0.786
mgf023693m Mimulus guttatus mgf023693m I 0.786
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.708
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.796
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.831
OBART07G06690 Oryza barthii OBART07G06690 I 0.831
OBART07G19610 Oryza barthii OBART07G19610 I 0.716
OBART12G17080 Oryza barthii OBART12G17080 I 0.796
OB07G15030 Oryza brachyantha OB07G15030 I 0.831
OB09G23520 Oryza brachyantha OB09G23520 I 0.722
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.831
ORGLA07G0253000 Oryza glaberrima ORGLA07G0253000 I 0.716
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.796
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.831
OGLUM07G19400 Oryza glumaepatula OGLUM07G19400 I 0.716
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.710
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.796
BGIOSGA024035 Oryza indica BGIOSGA024035 I 0.716
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.831
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.726
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.796
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.831
OMERI07G16350 Oryza meridionalis OMERI07G16350 I 0.716
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.728
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.796
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.831
ONIVA07G17970 Oryza nivara ONIVA07G17970 I 0.716
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.726
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.796
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.826
OPUNC07G18550 Oryza punctata OPUNC07G18550 I 0.716
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.728
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.796
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.831
ORUFI07G20430 Oryza rufipogon ORUFI07G20430 I 0.716
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.728
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.796
OS07G0204000 Oryza sativa OS07G0204000 I 0.831
OS07G0575000 Oryza sativa OS07G0575000 I 0.716
OS12G0582900 Oryza sativa OS12G0582900 I 0.796
Pavir.Ba00533 Panicum virgatum Pavir.Ba00533 I 0.718
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.723
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.827
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.822
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.799
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.799
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.799
Pavir.J19478 Panicum virgatum Pavir.J19478 I 0.718
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.799
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.799
e_gw1.233.44.1 Physcomitrella patens e_gw1.233.44.1 I 0.677
e_gw1.64.98.1 Physcomitrella patens e_gw1.64.98.1 I 0.677
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.831
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.831
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.786
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.741
POPTR_0013s05330 Populus trichocarpa POPTR_0013s05330 I 0.735
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.724
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.796
POPTR_0019s05170 Populus trichocarpa POPTR_0019s05170 I 0.716
Pm000004 Prunus mume Pm000004 I 0.781
Pm008788 Prunus mume Pm008788 I 0.724
Pm015931 Prunus mume Pm015931 I 0.796
Pm025326 Prunus mume Pm025326 I 0.831
Pm030235 Prunus mume Pm030235 I 0.705
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.831
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.705
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.724
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.796
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.781
29635.m000461 Ricinus communis 29635.m000461 I 0.796
29813.m001543 Ricinus communis 29813.m001543 I 0.794
30068.m002623 Ricinus communis 30068.m002623 I 0.680
30084.m000185 Ricinus communis 30084.m000185 I 0.832
30174.m008961 Ricinus communis 30174.m008961 I 0.720
30174.m009031 Ricinus communis 30174.m009031 I 0.732
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.805
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.796
SapurV1A.0598s0020 Salix purpurea SapurV1A.0598s0020 I 0.713
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.831
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.821
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.724
SELMODRAFT_17708 Selaginella moellendorffii SELMODRAFT_17708 I 0.682
SELMODRAFT_28575 Selaginella moellendorffii SELMODRAFT_28575 I 0.683
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.777
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.777
Si024417m.g Setaria italica Si024417m.g I 0.799
Si027288m.g Setaria italica Si027288m.g I 0.682
Si030686m.g Setaria italica Si030686m.g I 0.718
Si032213m.g Setaria italica Si032213m.g I 0.723
Si033237m.g Setaria italica Si033237m.g I 0.828
Si038848m.g Setaria italica Si038848m.g I 0.796
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.776
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.727
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.803
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.748
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.796
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.727
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.748
PGSC0003DMG400024606 Solanum tuberosum PGSC0003DMG400024606 I 0.693
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.805
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.799
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.828
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.717
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.796
TCM_005425 Theobroma cacao TCM_005425 I 0.724
TCM_011632 Theobroma cacao TCM_011632 I 0.758
TCM_014471 Theobroma cacao TCM_014471 I 0.703
TCM_015579 Theobroma cacao TCM_015579 I 0.686
TCM_018659 Theobroma cacao TCM_018659 I 0.796
TCM_025913 Theobroma cacao TCM_025913 I 0.831
TCM_040015 Theobroma cacao TCM_040015 I 0.831
Traes_2BS_B1A73C7A8 Triticum aestivum Traes_2BS_B1A73C7A8 I 0.716
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.796
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.783
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.831
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.796
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.688
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.799
GRMZM2G011236 Zea mays GRMZM2G011236 I 0.721
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.717
GRMZM2G019443 Zea mays GRMZM2G019443 I 0.759
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.796
GRMZM2G384386 Zea mays GRMZM2G384386 I 0.718