MDP0000188698 (Malus domestica)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 MDP0000188698 T009011_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.862 0.867
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.862 0.867
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.836 0.837
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.836 0.837
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.821 0.816
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.821 0.816
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.804 0.837
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.804 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000188698 AP2 218 269
MDP0000188698 AP2 311 363

Links

Other AP2 family TFs
Other Malus domestica TFs

525 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo9g003750 Brassica oleracea Bo9g003750 N
Bra037388 Brassica rapa Bra037388 N
MLOC_68772 Hordeum vulgare MLOC_68772 N
LPERR01G19720 Leersia perrieri LPERR01G19720 N
LPERR01G19750 Leersia perrieri LPERR01G19750 N
OBART01G22950 Oryza barthii OBART01G22950 N
OBART01G22980 Oryza barthii OBART01G22980 N
OB01G32460 Oryza brachyantha OB01G32460 N
OB01G32480 Oryza brachyantha OB01G32480 N
OGLUM01G26760 Oryza glumaepatula OGLUM01G26760 N
OGLUM01G26700 Oryza glumaepatula OGLUM01G26700 N
BGIOSGA001193 Oryza indica BGIOSGA001193 N
BGIOSGA001192 Oryza indica BGIOSGA001192 N
OLONG_010128 Oryza longistaminata OLONG_010128 N
OMERI01G21040 Oryza meridionalis OMERI01G21040 N
OPUNC01G23150 Oryza punctata OPUNC01G23150 N
ORUFI01G25760 Oryza rufipogon ORUFI01G25760 N
ORUFI01G25800 Oryza rufipogon ORUFI01G25800 N
Pavir.Eb02165 Panicum virgatum Pavir.Eb02165 N
Pavir.J30777 Panicum virgatum Pavir.J30777 N
Sb03g028170 Sorghum bicolor Sb03g028170 N
TRAES3BF020200120CFD_g Triticum aestivum TRAES3BF020200120CFD_g N
Traes_3DL_30CF35BB3 Triticum aestivum Traes_3DL_30CF35BB3 N
TRIUR3_10842 Triticum urartu TRIUR3_10842 N
GRMZM2G057955 Zea mays GRMZM2G057955 N