Pavir.Bb01980 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Bb01980 T009380_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.851 0.960
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.838 0.940
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.838 0.940
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.722 0.860
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.722 0.860
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.685 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Bb01980.1.p AP2 92 143

Links

Other AP2 family TFs
Other Panicum virgatum TFs

449 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CTHT_0011050 Chaetomium thermophilum CTHT_0011050 N
FGRRES_11623 Fusarium graminearum FGRRES_11623 N
FOXG_14230 Fusarium oxysporum FOXG_14230 N
FOXG_15625 Fusarium oxysporum FOXG_15625 N
FPSE_05614 Fusarium pseudograminearum FPSE_05614 N
FVEG_13087 Fusarium verticillioides FVEG_13087 I
MYCTH_2310995 Myceliophthora thermophila MYCTH_2310995 I
PFICI_07049 Pestalotiopsis fici PFICI_07049 N
S40288_07939 Stachybotrys chartarum S40288_07939 N
S40285_01792 Stachybotrys chlorohalonata S40285_01792 N
THITE_2111320 Thielavia terrestris THITE_2111320 I