Pavir.Ia04158 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ia04158 T009512_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
P93392_TOBAC
M09731_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OPBP1_01 		0.681 0.750
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia04158.1.p AP2 185 234

Links

Other AP2 family TFs
Other Panicum virgatum TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G72450 Brachypodium distachyon BRADI1G72450 I 0.724
BRADI2G11890 Brachypodium distachyon BRADI2G11890 I 0.682
BRADI5G25570 Brachypodium distachyon BRADI5G25570 I 0.684
evm.TU.supercontig_162.25 Carica papaya evm.TU.supercontig_162.25 I 0.679
Ca_12081 Cicer arietinum Ca_12081 I 0.685
Cla007697 Citrullus lanatus Cla007697 I 0.680
Ciclev10021622m.g Citrus clementina Ciclev10021622m.g I 0.691
orange1.1g042174m.g Citrus sinensis orange1.1g042174m.g I 0.691
Cucsa.062330 Cucumis sativus Cucsa.062330 I 0.692
gene08077-v1.0-hybrid Fragaria vesca gene08077-v1.0-hybrid I 0.678
Gorai.005G049300 Gossypium raimondii Gorai.005G049300 I 0.683
Gorai.007G281000 Gossypium raimondii Gorai.007G281000 I 0.679
LPERR03G05410 Leersia perrieri LPERR03G05410 N 0.681
LPERR03G14670 Leersia perrieri LPERR03G14670 N 0.690
Lus10011829.g Linum usitatissimum Lus10011829.g I 0.680
Lus10021193.g Linum usitatissimum Lus10021193.g I 0.680
chr5.CM0341.90.nc Lotus japonicus chr5.CM0341.90.nc I 0.686
MDP0000246808 Malus domestica MDP0000246808 I 0.685
MDP0000322279 Malus domestica MDP0000322279 I 0.681
MDP0000447570 Malus domestica MDP0000447570 I 0.685
cassava47179.m1 Manihot esculenta cassava47179.m1 I 0.686
MTR_1g074370 Medicago truncatula MTR_1g074370 I 0.685
mgf023600m Mimulus guttatus mgf023600m I 0.681
GSMUA_Achr10G19950_001 Musa acuminata GSMUA_Achr10G19950_001 I 0.686
P93392_TOBAC Nicotiana tabacum P93392_TOBAC D 0.681
OBART03G06100 Oryza barthii OBART03G06100 I 0.730
OBART07G26160 Oryza barthii OBART07G26160 N 0.690
ORGLA01G0108600 Oryza glaberrima ORGLA01G0108600 I 0.682
ORGLA03G0058800 Oryza glaberrima ORGLA03G0058800 N 0.723
ORGLA03G0058900 Oryza glaberrima ORGLA03G0058900 I 0.730
ORGLA03G0161100 Oryza glaberrima ORGLA03G0161100 N 0.690
ORGLA07G0205000 Oryza glaberrima ORGLA07G0205000 N 0.690
OGLUM03G06090 Oryza glumaepatula OGLUM03G06090 N 0.723
OGLUM03G06100 Oryza glumaepatula OGLUM03G06100 I 0.730
OGLUM03G17210 Oryza glumaepatula OGLUM03G17210 N 0.690
OGLUM04G28860 Oryza glumaepatula OGLUM04G28860 I 0.678
OGLUM07G26170 Oryza glumaepatula OGLUM07G26170 N 0.690
BGIOSGA003364 Oryza indica BGIOSGA003364 I 0.682
BGIOSGA011326 Oryza indica BGIOSGA011326 I 0.730
BGIOSGA012597 Oryza indica BGIOSGA012597 N 0.690
BGIOSGA014134 Oryza indica BGIOSGA014134 I 0.678
BGIOSGA023726 Oryza indica BGIOSGA023726 N 0.690
OMERI03G05920 Oryza meridionalis OMERI03G05920 I 0.730
OMERI03G15020 Oryza meridionalis OMERI03G15020 N 0.690
OMERI04G24480 Oryza meridionalis OMERI04G24480 I 0.678
OMERI07G22780 Oryza meridionalis OMERI07G22780 N 0.690
OMERI12G11270 Oryza meridionalis OMERI12G11270 I 0.682
ONIVA03G06100 Oryza nivara ONIVA03G06100 N 0.723
ONIVA03G06110 Oryza nivara ONIVA03G06110 I 0.730
ONIVA03G17860 Oryza nivara ONIVA03G17860 N 0.690
ONIVA04G27460 Oryza nivara ONIVA04G27460 I 0.678
ONIVA07G25780 Oryza nivara ONIVA07G25780 N 0.690
OPUNC01G12900 Oryza punctata OPUNC01G12900 I 0.682
OPUNC03G05900 Oryza punctata OPUNC03G05900 I 0.731
OPUNC03G16250 Oryza punctata OPUNC03G16250 N 0.690
OPUNC07G24590 Oryza punctata OPUNC07G24590 N 0.690
ORUFI03G05920 Oryza rufipogon ORUFI03G05920 N 0.723
ORUFI03G17430 Oryza rufipogon ORUFI03G17430 N 0.690
ORUFI04G30650 Oryza rufipogon ORUFI04G30650 I 0.678
ORUFI07G27120 Oryza rufipogon ORUFI07G27120 N 0.690
OS01G0313300 Oryza sativa OS01G0313300 I 0.682
OS03G0183300 Oryza sativa OS03G0183300 I 0.730
OS03G0341000 Oryza sativa OS03G0341000 N 0.690
OS04G0669200 Oryza sativa OS04G0669200 I 0.678
OS07G0674800 Oryza sativa OS07G0674800 N 0.690
Pavir.Ba00136 Panicum virgatum Pavir.Ba00136 I 0.696
Pavir.Bb03609 Panicum virgatum Pavir.Bb03609 I 0.696
Pavir.Eb02324 Panicum virgatum Pavir.Eb02324 I 0.682
Pavir.Ib00527 Panicum virgatum Pavir.Ib00527 N 0.717
Pavir.Ib00528 Panicum virgatum Pavir.Ib00528 I 0.802
Pavir.J08480 Panicum virgatum Pavir.J08480 I 0.682
Pavir.J12680 Panicum virgatum Pavir.J12680 N 0.729
POPTR_0002s04020 Populus trichocarpa POPTR_0002s04020 I 0.692
POPTR_0005s24460 Populus trichocarpa POPTR_0005s24460 I 0.690
POPTR_0010s08300 Populus trichocarpa POPTR_0010s08300 I 0.698
29895.m000321 Ricinus communis 29895.m000321 I 0.678
SapurV1A.0006s0850 Salix purpurea SapurV1A.0006s0850 I 0.692
SapurV1A.0007s0980 Salix purpurea SapurV1A.0007s0980 I 0.686
SapurV1A.0233s0370 Salix purpurea SapurV1A.0233s0370 I 0.690
SapurV1A.2490s0030 Salix purpurea SapurV1A.2490s0030 I 0.686
SELMODRAFT_17703 Selaginella moellendorffii SELMODRAFT_17703 I 0.688
SELMODRAFT_73134 Selaginella moellendorffii SELMODRAFT_73134 I 0.688
Si002845m.g Setaria italica Si002845m.g I 0.682
Si031079m.g Setaria italica Si031079m.g I 0.696
Si036118m.g Setaria italica Si036118m.g I 0.777
Sb01g045040 Sorghum bicolor Sb01g045040 I 0.737
Sb01g045050 Sorghum bicolor Sb01g045050 N 0.729
Sb02g042760 Sorghum bicolor Sb02g042760 I 0.696
Sb03g012890 Sorghum bicolor Sb03g012890 I 0.682
TCM_026233 Theobroma cacao TCM_026233 I 0.679
TRAES3BF171600010CFD_g Triticum aestivum TRAES3BF171600010CFD_g I 0.682
Traes_4AS_8A64DBE8E Triticum aestivum Traes_4AS_8A64DBE8E I 0.705
Traes_4BL_7EC2BFC7B Triticum aestivum Traes_4BL_7EC2BFC7B I 0.747
Traes_5BL_98D063967 Triticum aestivum Traes_5BL_98D063967 I 0.682
Traes_5DL_41E3B1B23 Triticum aestivum Traes_5DL_41E3B1B23 I 0.682
TRIUR3_28710 Triticum urartu TRIUR3_28710 I 0.687
AC206951.3_FG016 Zea mays AC206951.3_FG016 N 0.708
AC206951.3_FG017 Zea mays AC206951.3_FG017 I 0.738
GRMZM2G025062 Zea mays GRMZM2G025062 I 0.696
GRMZM2G053503 Zea mays GRMZM2G053503 I 0.682
GRMZM2G148333 Zea mays GRMZM2G148333 I 0.682
GRMZM2G169382 Zea mays GRMZM2G169382 I 0.682