chr3.CM0602.440.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr3.CM0602.440.nd T010188_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.883 0.865
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.883 0.865
Q6SA75_TOBAC
M09733_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_01 		0.852 0.846
Q6SA75_TOBAC
M09734_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ANTL_02 		0.852 0.846
ANT
M02647_2.00 		Arabidopsis thaliana
DNRCACRNWTCCCVADGYNHW
WDNRCHTBGGGAWNYGTGYNH		 SELEX
Mathelier et al.(2014)
MA0571.1 		0.838 0.827
ANT
M09705_2.00 		Arabidopsis thaliana
CACRNWTCCCRAKG
CMTYGGGAWNYGTG		 Transfac
Matys et al.(2006)
P$ANT_01 		0.838 0.827
AIL7
M06688_2.00 		Arabidopsis thaliana
CRNWTHYCRAG
CTYGRDAWNYG		 Dap-seq
OMalley et al.(2016)
AIL7_col_a 		0.824 0.837
AIL7
M06689_2.00 		Arabidopsis thaliana
DCRNWTHYCRAG
CTYGRDAWNYGH		 Dap-seq
OMalley et al.(2016)
AIL7_colamp_a 		0.824 0.837
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr3.CM0602.440.nd AP2 174 231
chr3.CM0602.440.nd AP2 273 325

Links

Other AP2 family TFs
Other Lotus japonicus TFs

526 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
gw1.00083.300.1 Aspergillus carbonarius gw1.00083.300.1 N
CADANGAG00006610 Aspergillus niger CADANGAG00006610 N
PV07_04962 Cladophialophora immunda PV07_04962 N
A1O5_09327 Cladophialophora psammophila A1O5_09327 N
A1O9_00991 Exophiala aquamarina A1O9_00991 N
A1O9_01783 Exophiala aquamarina A1O9_01783 N
Z517_03162 Fonsecaea pedrosoi Z517_03162 N
OIDMADRAFT_193465 Oidiodendron maius OIDMADRAFT_193465 N