ARID3A (Pan troglodytes)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 ENSPTRG00000010173 T014744_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.785 1.000
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.785 1.000
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.785 1.000
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.785 1.000
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.785 1.000
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.785 0.988
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.720 0.779
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.706 0.837
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.706 0.837
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.706 0.837
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.706 0.837
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.695 0.895
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.694 0.488
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.683 0.686
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.554 0.419
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.521 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPTRP00000012453 ARID/BRIGHT 131 217

Links

Other ARID/BRIGHT family TFs
Other Pan troglodytes TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_17920 Aegilops tauschii F775_17920 I 0.000
AMTR_s00022p00216890 Amborella trichopoda AMTR_s00022p00216890 I 0.000
Aquca_007_00017 Aquilegia coerulea Aquca_007_00017 I 0.000
EIL3 Arabidopsis lyrata scaffold_202309.1 I 0.000
EIL3 Arabidopsis thaliana AT1G73730 D 0.000
Bostr.3288s0016 Boechera stricta Bostr.3288s0016 I 0.000
BRADI3G39970 Brachypodium distachyon BRADI3G39970 I 0.000
BRADI4G33750 Brachypodium distachyon BRADI4G33750 I 0.000
Bo6g118030 Brassica oleracea Bo6g118030 I 0.000
Bo6g087550 Brassica oleracea Bo6g087550 I 0.000
Bra015970 Brassica rapa Bra015970 I 0.000
Bra008110 Brassica rapa Bra008110 I 0.000
PK19114.1 Cannabis sativa PK19114.1 I 0.000
Cagra.0876s0005 Capsella grandiflora Cagra.0876s0005 I 0.000
Carubv10020043m.g Capsella rubella Carubv10020043m.g I 0.000
Ca_02669 Cicer arietinum Ca_02669 I 0.000
Ciclev10015261m.g Citrus clementina Ciclev10015261m.g I 0.000
orange1.1g007662m.g Citrus sinensis orange1.1g007662m.g I 0.000
Cucsa.143220 Cucumis sativus Cucsa.143220 I 0.000
Eucgr.B03664 Eucalyptus grandis Eucgr.B03664 I 0.000
Thhalv10018327m.g Eutrema salsugineum Thhalv10018327m.g I 0.000
gene20650-v1.0-hybrid Fragaria vesca gene20650-v1.0-hybrid I 0.000
GLYMA13G41751 Glycine max GLYMA13G41751 I 0.000
GLYMA15G03650 Glycine max GLYMA15G03650 I 0.000
Gorai.009G071400 Gossypium raimondii Gorai.009G071400 I 0.000
Gorai.010G128700 Gossypium raimondii Gorai.010G128700 I 0.000
MLOC_10823 Hordeum vulgare MLOC_10823 I 0.000
MLOC_10315 Hordeum vulgare MLOC_10315 I 0.000
LPERR09G10870 Leersia perrieri LPERR09G10870 I 0.000
LPERR08G16890 Leersia perrieri LPERR08G16890 I 0.000
Lus10031245.g Linum usitatissimum Lus10031245.g I 0.000
Lus10031817.g Linum usitatissimum Lus10031817.g I 0.000
chr3.LjB09K03.50.nc Lotus japonicus chr3.LjB09K03.50.nc I 0.000
MDP0000490180 Malus domestica MDP0000490180 I 0.000
MDP0000562585 Malus domestica MDP0000562585 I 0.000
MDP0000565880 Malus domestica MDP0000565880 I 0.000
cassava2120.valid.m1 Manihot esculenta cassava2120.valid.m1 I 0.000
cassava30700.valid.m1 Manihot esculenta cassava30700.valid.m1 I 0.000
MTR_2g098470 Medicago truncatula MTR_2g098470 I 0.000
mgf020935m Mimulus guttatus mgf020935m I 0.000
GSMUA_Achr3G11160_001 Musa acuminata GSMUA_Achr3G11160_001 I 0.000
GSMUA_Achr8G25580_001 Musa acuminata GSMUA_Achr8G25580_001 I 0.000
GSMUA_Achr9G27680_001 Musa acuminata GSMUA_Achr9G27680_001 I 0.000
OBART08G19960 Oryza barthii OBART08G19960 I 0.000
OBART09G14750 Oryza barthii OBART09G14750 I 0.000
OB09G21280 Oryza brachyantha OB09G21280 I 0.000
OB08G26880 Oryza brachyantha OB08G26880 I 0.000
ORGLA09G0113600 Oryza glaberrima ORGLA09G0113600 I 0.000
OGLUM08G21190 Oryza glumaepatula OGLUM08G21190 I 0.000
OGLUM09G15380 Oryza glumaepatula OGLUM09G15380 I 0.000
BGIOSGA029545 Oryza indica BGIOSGA029545 I 0.000
OMERI09G11470 Oryza meridionalis OMERI09G11470 I 0.000
OMERI08G16770 Oryza meridionalis OMERI08G16770 I 0.000
ONIVA08G22530 Oryza nivara ONIVA08G22530 I 0.000
ONIVA08G17420 Oryza nivara ONIVA08G17420 I 0.000
OPUNC08G18080 Oryza punctata OPUNC08G18080 I 0.000
OPUNC09G13210 Oryza punctata OPUNC09G13210 I 0.000
ORUFI08G22370 Oryza rufipogon ORUFI08G22370 I 0.000
ORUFI09G15900 Oryza rufipogon ORUFI09G15900 I 0.000
OS08G0508700 Oryza sativa OS08G0508700 I 0.000
OS09G0490200 Oryza sativa OS09G0490200 D 0.000
Pavir.Fa00424 Panicum virgatum Pavir.Fa00424 I 0.000
Pavir.Fb01951 Panicum virgatum Pavir.Fb01951 I 0.000
Pavir.J02229 Panicum virgatum Pavir.J02229 I 0.000
Pavir.J14329 Panicum virgatum Pavir.J14329 I 0.000
PDK_20s1301801g002 Phoenix dactylifera PDK_20s1301801g002 I 0.000
POPTR_0001s05360 Populus trichocarpa POPTR_0001s05360 I 0.000
POPTR_0003s22090 Populus trichocarpa POPTR_0003s22090 I 0.000
Pm028171 Prunus mume Pm028171 I 0.000
PRUPE_ppa003113mg Prunus persica PRUPE_ppa003113mg I 0.000
30169.m006395 Ricinus communis 30169.m006395 I 0.000
SapurV1A.0850s0030 Salix purpurea SapurV1A.0850s0030 I 0.000
SapurV1A.0009s0320 Salix purpurea SapurV1A.0009s0320 I 0.000
Si013426m.g Setaria italica Si013426m.g I 0.000
Si029259m.g Setaria italica Si029259m.g I 0.000
Solyc01g006650.1 Solanum lycopersicum Solyc01g006650.1 I 0.000
Solyc01g014480.2 Solanum lycopersicum Solyc01g014480.2 I 0.000
PGSC0003DMG400029908 Solanum tuberosum PGSC0003DMG400029908 I 0.000
PGSC0003DMG400021381 Solanum tuberosum PGSC0003DMG400021381 I 0.000
Sb07g027790 Sorghum bicolor Sb07g027790 I 0.000
TCM_040510 Theobroma cacao TCM_040510 I 0.000
Traes_5AL_B65EF5518 Triticum aestivum Traes_5AL_B65EF5518 I 0.000
Traes_5BL_B6051DD37 Triticum aestivum Traes_5BL_B6051DD37 I 0.000
Traes_7AS_34D476D5D1 Triticum aestivum Traes_7AS_34D476D5D1 I 0.000
Traes_7BS_733347AC0 Triticum aestivum Traes_7BS_733347AC0 I 0.000
Traes_7DS_3673F1C73 Triticum aestivum Traes_7DS_3673F1C73 I 0.000
TRIUR3_08597 Triticum urartu TRIUR3_08597 I 0.000
TRIUR3_28079 Triticum urartu TRIUR3_28079 I 0.000
EIL3 Vitis vinifera VIT_06s0004g01610 I 0.000
AC234203.1_FG011 Zea mays AC234203.1_FG011 I 0.000
GRMZM2G006752 Zea mays GRMZM2G006752 I 0.000