GA18855 (Drosophila pseudoobscura)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 FBgn0078855 T014862_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.785 1.000
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.785 1.000
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.785 1.000
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.785 1.000
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.762 0.756
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.706 0.837
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.706 0.837
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.706 0.837
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.706 0.837
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.706 0.837
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.706 0.826
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.682 0.733
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.670 0.512
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.644 0.791
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.541 0.395
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
FBpp0276446 ARID/BRIGHT 309 395

Links

Other ARID/BRIGHT family TFs
Other Drosophila pseudoobscura TFs

378 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00917 Aegilops tauschii F775_00917 I 0.000
F775_21953 Aegilops tauschii F775_21953 I 0.000
Al_scaffold_0409_3 Arabidopsis lyrata Al_scaffold_0409_3 I 0.000
SUP Arabidopsis lyrata fgenesh2_kg.3__2524__AT3G23130.1 I 0.000
RBE Arabidopsis lyrata fgenesh2_kg.6__542__AT5G06070.1 I 0.000
scaffold_403098.1 Arabidopsis lyrata scaffold_403098.1 I 0.000
ZFP11 Arabidopsis thaliana AT2G42410 I 0.000
SUP Arabidopsis thaliana AT3G23130 I 0.000
AT4G17810 Arabidopsis thaliana AT4G17810 I 0.000
RBE Arabidopsis thaliana AT5G06070 D 0.000
Bostr.13129s0367 Boechera stricta Bostr.13129s0367 I 0.000
Bostr.19424s0332 Boechera stricta Bostr.19424s0332 I 0.000
Bostr.25993s0539 Boechera stricta Bostr.25993s0539 I 0.000
Bostr.30275s0246 Boechera stricta Bostr.30275s0246 I 0.000
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I 0.000
BRADI3G55760 Brachypodium distachyon BRADI3G55760 I 0.000
Bo1g017920 Brassica oleracea Bo1g017920 I 0.000
Bo1g102390 Brassica oleracea Bo1g102390 I 0.000
Bo3g003640 Brassica oleracea Bo3g003640 I 0.000
Bo9g176590 Brassica oleracea Bo9g176590 I 0.000
Bra005874 Brassica rapa Bra005874 I 0.000
Bra009160 Brassica rapa Bra009160 I 0.000
Bra013257 Brassica rapa Bra013257 I 0.000
Bra023759 Brassica rapa Bra023759 I 0.000
Cagra.2117s0055 Capsella grandiflora Cagra.2117s0055 I 0.000
Cagra.2636s0028 Capsella grandiflora Cagra.2636s0028 I 0.000
Cagra.3356s0074 Capsella grandiflora Cagra.3356s0074 I 0.000
Cagra.3462s0001 Capsella grandiflora Cagra.3462s0001 I 0.000
Carubv10002935m.g Capsella rubella Carubv10002935m.g I 0.000
Carubv10006881m.g Capsella rubella Carubv10006881m.g I 0.000
Carubv10016073m.g Capsella rubella Carubv10016073m.g I 0.000
Carubv10024766m.g Capsella rubella Carubv10024766m.g I 0.000
evm.TU.supercontig_44.99 Carica papaya evm.TU.supercontig_44.99 I 0.000
Ca_12901 Cicer arietinum Ca_12901 I 0.000
Cla008944 Citrullus lanatus Cla008944 I 0.000
Cla016442 Citrullus lanatus Cla016442 I 0.000
Cla021878 Citrullus lanatus Cla021878 I 0.000
Ciclev10006961m.g Citrus clementina Ciclev10006961m.g I 0.000
orange1.1g041626m.g Citrus sinensis orange1.1g041626m.g I 0.000
Cucsa.255130 Cucumis sativus Cucsa.255130 I 0.000
Cucsa.313240 Cucumis sativus Cucsa.313240 I 0.000
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.000
Thhalv10015420m.g Eutrema salsugineum Thhalv10015420m.g I 0.000
Thhalv10017870m.g Eutrema salsugineum Thhalv10017870m.g I 0.000
Thhalv10021992m.g Eutrema salsugineum Thhalv10021992m.g I 0.000
gene08240-v1.0-hybrid Fragaria vesca gene08240-v1.0-hybrid I 0.000
GLYMA07G16290 Glycine max GLYMA07G16290 I 0.000
GLYMA11G34285 Glycine max GLYMA11G34285 I 0.000
GLYMA12G35930 Glycine max GLYMA12G35930 I 0.000
GLYMA13G34450 Glycine max GLYMA13G34450 I 0.000
Gorai.005G047800 Gossypium raimondii Gorai.005G047800 I 0.000
Gorai.006G247700 Gossypium raimondii Gorai.006G247700 I 0.000
Gorai.008G226800 Gossypium raimondii Gorai.008G226800 I 0.000
Gorai.012G106300 Gossypium raimondii Gorai.012G106300 I 0.000
MLOC_76482 Hordeum vulgare MLOC_76482 I 0.000
LPERR04G01660 Leersia perrieri LPERR04G01660 I 0.000
LPERR05G08090 Leersia perrieri LPERR05G08090 I 0.000
Lus10000705.g Linum usitatissimum Lus10000705.g I 0.000
Lus10021213.g Linum usitatissimum Lus10021213.g I 0.000
Lus10022204.g Linum usitatissimum Lus10022204.g I 0.000
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.000
Lus10024875.g Linum usitatissimum Lus10024875.g I 0.000
chr1.CM0147.870.nc Lotus japonicus chr1.CM0147.870.nc I 0.000
LjSGA_038753.2 Lotus japonicus LjSGA_038753.2 I 0.000
MDP0000225209 Malus domestica MDP0000225209 I 0.000
cassava14614.m1 Manihot esculenta cassava14614.m1 I 0.000
cassava22028.m1 Manihot esculenta cassava22028.m1 I 0.000
cassava3359.m1 Manihot esculenta cassava3359.m1 I 0.000
cassava40050.m1 Manihot esculenta cassava40050.m1 I 0.000
MTR_1g070265 Medicago truncatula MTR_1g070265 I 0.000
MTR_7g063220 Medicago truncatula MTR_7g063220 I 0.000
mg013419m Mimulus guttatus mg013419m I 0.000
mgf024356m Mimulus guttatus mgf024356m I 0.000
GSMUA_Achr7G26850_001 Musa acuminata GSMUA_Achr7G26850_001 I 0.000
OBART04G02370 Oryza barthii OBART04G02370 I 0.000
OBART05G10090 Oryza barthii OBART05G10090 I 0.000
OBART11G23770 Oryza barthii OBART11G23770 I 0.000
OB02G10110 Oryza brachyantha OB02G10110 I 0.000
OB02G44430 Oryza brachyantha OB02G44430 I 0.000
OB04G12040 Oryza brachyantha OB04G12040 I 0.000
OB05G18710 Oryza brachyantha OB05G18710 I 0.000
ORGLA05G0088100 Oryza glaberrima ORGLA05G0088100 I 0.000
OGLUM04G02100 Oryza glumaepatula OGLUM04G02100 I 0.000
OGLUM05G10360 Oryza glumaepatula OGLUM05G10360 I 0.000
OGLUM11G22950 Oryza glumaepatula OGLUM11G22950 I 0.000
BGIOSGA015610 Oryza indica BGIOSGA015610 I 0.000
BGIOSGA018378 Oryza indica BGIOSGA018378 I 0.000
BGIOSGA033510 Oryza indica BGIOSGA033510 I 0.000
OLONG_005038 Oryza longistaminata OLONG_005038 I 0.000
OLONG_022667 Oryza longistaminata OLONG_022667 I 0.000
OLONG_023754 Oryza longistaminata OLONG_023754 I 0.000
OMERI04G02610 Oryza meridionalis OMERI04G02610 I 0.000
OMERI07G13080 Oryza meridionalis OMERI07G13080 I 0.000
ONIVA04G01910 Oryza nivara ONIVA04G01910 I 0.000
ONIVA11G23290 Oryza nivara ONIVA11G23290 I 0.000
OPUNC05G08760 Oryza punctata OPUNC05G08760 I 0.000
OPUNC11G05640 Oryza punctata OPUNC11G05640 I 0.000
ORUFI04G03150 Oryza rufipogon ORUFI04G03150 I 0.000
ORUFI05G10920 Oryza rufipogon ORUFI05G10920 I 0.000
ORUFI11G25670 Oryza rufipogon ORUFI11G25670 I 0.000
OS04G0168100 Oryza sativa OS04G0168100 I 0.000
OS05G0286100 Oryza sativa OS05G0286100 I 0.000
OS11G0707300 Oryza sativa OS11G0707300 I 0.000
Pavir.Aa03593 Panicum virgatum Pavir.Aa03593 I 0.000
Pavir.Ab00024 Panicum virgatum Pavir.Ab00024 I 0.000
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I 0.000
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I 0.000
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I 0.000
Pavir.Gb02516 Panicum virgatum Pavir.Gb02516 I 0.000
Pavir.J31403 Panicum virgatum Pavir.J31403 I 0.000
PDK_20s1313421g001 Phoenix dactylifera PDK_20s1313421g001 I 0.000
PDK_20s1360411g001 Phoenix dactylifera PDK_20s1360411g001 I 0.000
e_gw1.14.264.1 Physcomitrella patens e_gw1.14.264.1 I 0.000
e_gw1.1.457.1 Physcomitrella patens e_gw1.1.457.1 I 0.000
e_gw1.186.49.1 Physcomitrella patens e_gw1.186.49.1 I 0.000
e_gw1.6.268.1 Physcomitrella patens e_gw1.6.268.1 I 0.000
POPTR_0002s04260 Populus trichocarpa POPTR_0002s04260 I 0.000
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.000
POPTR_0010s08530 Populus trichocarpa POPTR_0010s08530 I 0.000
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.000
Pm009420 Prunus mume Pm009420 I 0.000
PRUPE_ppa015007mg Prunus persica PRUPE_ppa015007mg I 0.000
29603.m000536 Ricinus communis 29603.m000536 I 0.000
SapurV1A.0006s1030 Salix purpurea SapurV1A.0006s1030 I 0.000
SapurV1A.0007s0790 Salix purpurea SapurV1A.0007s0790 I 0.000
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I 0.000
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I 0.000
SapurV1A.0292s0200 Salix purpurea SapurV1A.0292s0200 I 0.000
SapurV1A.0378s0150 Salix purpurea SapurV1A.0378s0150 I 0.000
Si011797m.g Setaria italica Si011797m.g I 0.000
Si019050m.g Setaria italica Si019050m.g I 0.000
Si019563m.g Setaria italica Si019563m.g I 0.000
Si024070m.g Setaria italica Si024070m.g I 0.000
Si032478m.g Setaria italica Si032478m.g I 0.000
Solyc06g053720.1 Solanum lycopersicum Solyc06g053720.1 I 0.000
Solyc09g089590.1 Solanum lycopersicum Solyc09g089590.1 I 0.000
PGSC0003DMG400017271 Solanum tuberosum PGSC0003DMG400017271 I 0.000
PGSC0003DMG400040225 Solanum tuberosum PGSC0003DMG400040225 I 0.000
Sb02g009930 Sorghum bicolor Sb02g009930 I 0.000
Sb04g037590 Sorghum bicolor Sb04g037590 I 0.000
Sb06g001730 Sorghum bicolor Sb06g001730 I 0.000
TCM_021875 Theobroma cacao TCM_021875 I 0.000
Traes_1AL_80D0BD0DC Triticum aestivum Traes_1AL_80D0BD0DC I 0.000
Traes_1BL_4026DC5011 Triticum aestivum Traes_1BL_4026DC5011 I 0.000
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I 0.000
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I 0.000
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I 0.000
TRIUR3_03721 Triticum urartu TRIUR3_03721 I 0.000
TRIUR3_04794 Triticum urartu TRIUR3_04794 I 0.000
TRIUR3_25222 Triticum urartu TRIUR3_25222 I 0.000
VIT_05s0049g00070 Vitis vinifera VIT_05s0049g00070 I 0.000
VIT_05s0049g00080 Vitis vinifera VIT_05s0049g00080 I 0.000
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.000
GRMZM2G137736 Zea mays GRMZM2G137736 I 0.000
GRMZM2G344974 Zea mays GRMZM2G344974 I 0.000
GRMZM2G409452 Zea mays GRMZM2G409452 I 0.000
GRMZM2G443109 Zea mays GRMZM2G443109 I 0.000