PGSC0003DMG400021771 (Solanum tuberosum)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 PGSC0003DMG400021771 T015423_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.617 0.711
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.571 0.639
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400056041 ARID/BRIGHT 190 273

Links

Other ARID/BRIGHT family TFs
Other Solanum tuberosum TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00917 Aegilops tauschii F775_00917 I 0.000
AMTR_s00012p00258620 Amborella trichopoda AMTR_s00012p00258620 N 0.000
AMTR_s00009p00194700 Amborella trichopoda AMTR_s00009p00194700 N 0.000
Aquca_003_00162 Aquilegia coerulea Aquca_003_00162 N 0.000
scaffold_800693.1 Arabidopsis lyrata scaffold_800693.1 N 0.000
Bostr.3148s0115 Boechera stricta Bostr.3148s0115 N 0.000
BRADI1G52490 Brachypodium distachyon BRADI1G52490 I 0.000
Bo7g065530 Brassica oleracea Bo7g065530 N 0.000
Bo9g059250 Brassica oleracea Bo9g059250 N 0.000
Bra027500 Brassica rapa Bra027500 N 0.000
Bra033683 Brassica rapa Bra033683 N 0.000
PK22236.1 Cannabis sativa PK22236.1 N 0.000
Carubv10028256m.g Capsella rubella Carubv10028256m.g N 0.000
evm.TU.supercontig_44.98 Carica papaya evm.TU.supercontig_44.98 N 0.000
Cla021877 Citrullus lanatus Cla021877 N 0.000
Cla006093 Citrullus lanatus Cla006093 N 0.000
Cla008348 Citrullus lanatus Cla008348 N 0.000
Cla008944 Citrullus lanatus Cla008944 I 0.000
Ciclev10006751m.g Citrus clementina Ciclev10006751m.g N 0.000
Ciclev10022375m.g Citrus clementina Ciclev10022375m.g N 0.000
orange1.1g037433m.g Citrus sinensis orange1.1g037433m.g N 0.000
orange1.1g044013m.g Citrus sinensis orange1.1g044013m.g N 0.000
Cucsa.321760 Cucumis sativus Cucsa.321760 I 0.000
Cucsa.016990 Cucumis sativus Cucsa.016990 N 0.000
Cucsa.117650 Cucumis sativus Cucsa.117650 N 0.000
Eucgr.H00184 Eucalyptus grandis Eucgr.H00184 N 0.000
gene30215-v1.0-hybrid Fragaria vesca gene30215-v1.0-hybrid N 0.000
GLYMA07G16290 Glycine max GLYMA07G16290 I 0.000
GLYMA20G34840 Glycine max GLYMA20G34840 N 0.000
GLYMA12G06340 Glycine max GLYMA12G06340 N 0.000
GLYMA10G32810 Glycine max GLYMA10G32810 N 0.000
Gorai.011G172000 Gossypium raimondii Gorai.011G172000 N 0.000
Gorai.002G256500 Gossypium raimondii Gorai.002G256500 N 0.000
LPERR07G09750 Leersia perrieri LPERR07G09750 N 0.000
Lus10022206.g Linum usitatissimum Lus10022206.g I 0.000
Lus10022204.g Linum usitatissimum Lus10022204.g I 0.000
Lus10021213.g Linum usitatissimum Lus10021213.g I 0.000
chr1.CM0147.870.nc Lotus japonicus chr1.CM0147.870.nc I 0.000
MDP0000143134 Malus domestica MDP0000143134 N 0.000
cassava32634.m1 Manihot esculenta cassava32634.m1 N 0.000
cassava4410.m1 Manihot esculenta cassava4410.m1 N 0.000
MTR_1g075430 Medicago truncatula MTR_1g075430 N 0.000
MTR_1g070250 Medicago truncatula MTR_1g070250 N 0.000
MTR_7g063220 Medicago truncatula MTR_7g063220 I 0.000
MTR_4g064873 Medicago truncatula MTR_4g064873 N 0.000
mgf024356m Mimulus guttatus mgf024356m I 0.000
GSMUA_Achr8G14360_001 Musa acuminata GSMUA_Achr8G14360_001 N 0.000
GSMUA_Achr11G02150_001 Musa acuminata GSMUA_Achr11G02150_001 N 0.000
OBART07G11660 Oryza barthii OBART07G11660 N 0.000
OB02G44430 Oryza brachyantha OB02G44430 I 0.000
OB07G18110 Oryza brachyantha OB07G18110 N 0.000
ORGLA07G0099100 Oryza glaberrima ORGLA07G0099100 N 0.000
OGLUM07G11160 Oryza glumaepatula OGLUM07G11160 N 0.000
BGIOSGA025569 Oryza indica BGIOSGA025569 N 0.000
OLONG_012182 Oryza longistaminata OLONG_012182 N 0.000
ONIVA07G09640 Oryza nivara ONIVA07G09640 N 0.000
ONIVA07G09630 Oryza nivara ONIVA07G09630 N 0.000
OPUNC07G10480 Oryza punctata OPUNC07G10480 N 0.000
ORUFI07G11810 Oryza rufipogon ORUFI07G11810 N 0.000
OS07G0417400 Oryza sativa OS07G0417400 N 0.000
Pavir.Ab03315 Panicum virgatum Pavir.Ab03315 I 0.000
Pavir.Ba02387 Panicum virgatum Pavir.Ba02387 I 0.000
Pavir.Bb00955 Panicum virgatum Pavir.Bb00955 I 0.000
PDK_20s1360411g002 Phoenix dactylifera PDK_20s1360411g002 N 0.000
POPTR_0008s16390 Populus trichocarpa POPTR_0008s16390 I 0.000
POPTR_0016s10480 Populus trichocarpa POPTR_0016s10480 I 0.000
Pm009419 Prunus mume Pm009419 N 0.000
Pm002649 Prunus mume Pm002649 N 0.000
PRUPE_ppa016491mg Prunus persica PRUPE_ppa016491mg N 0.000
PRUPE_ppa021945mg Prunus persica PRUPE_ppa021945mg N 0.000
PRUPE_ppb012667mg Prunus persica PRUPE_ppb012667mg N 0.000
28345.m000111 Ricinus communis 28345.m000111 N 0.000
SapurV1A.0292s0190 Salix purpurea SapurV1A.0292s0190 I 0.000
SapurV1A.0007s0800 Salix purpurea SapurV1A.0007s0800 I 0.000
Si032478m.g Setaria italica Si032478m.g I 0.000
Si019563m.g Setaria italica Si019563m.g I 0.000
Sb04g037590 Sorghum bicolor Sb04g037590 I 0.000
Sb02g009930 Sorghum bicolor Sb02g009930 I 0.000
TCM_020819 Theobroma cacao TCM_020819 N 0.000
TCM_021876 Theobroma cacao TCM_021876 N 0.000
Traes_2AS_099955797 Triticum aestivum Traes_2AS_099955797 I 0.000
Traes_2BS_0544D9D4B Triticum aestivum Traes_2BS_0544D9D4B I 0.000
Traes_2DS_035AA95E3 Triticum aestivum Traes_2DS_035AA95E3 I 0.000
TRIUR3_25222 Triticum urartu TRIUR3_25222 I 0.000
VIT_06s0004g05260 Vitis vinifera VIT_06s0004g05260 N 0.000
GRMZM2G443109 Zea mays GRMZM2G443109 I 0.000
GRMZM2G409452 Zea mays GRMZM2G409452 I 0.000
GRMZM2G344974 Zea mays GRMZM2G344974 I 0.000
GRMZM2G000126 Zea mays GRMZM2G000126 I 0.000