POPTR_0011s14850 (Populus trichocarpa)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF01388 (ARID) IPR001606 POPTR_0011s14850 T015487_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.663 0.788
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.573 0.706
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0011s14850.1 ARID/BRIGHT 222 307

Links

Other ARID/BRIGHT family TFs
Other Populus trichocarpa TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARB_06946 Arthroderma benhamiae ARB_06946 I 0.000
MCYG_06710 Arthroderma otae MCYG_06710 I 0.000
fgenesh1_pg.00866_#_590 Aspergillus carbonarius fgenesh1_pg.00866_#_590 I 0.000
ACLA_002460 Aspergillus clavatus CADACLAG00000308 I 0.000
CADAFLAG00010556 Aspergillus flavus CADAFLAG00010556 I 0.000
AFUA_5G02690 Aspergillus fumigatus CADAFUAG00002913 I 0.000
ANIA_08125 Aspergillus nidulans CADANIAG00004158 D 0.000
CADANGAG00002516 Aspergillus niger CADANGAG00002516 I 0.000
CADAORAG00009712 Aspergillus oryzae CADAORAG00009712 I 0.000
EURHEDRAFT_520686 Aspergillus ruber EURHEDRAFT_520686 I 0.000
ATEG_09236 Aspergillus terreus CADATEAG00001412 I 0.000
BDDG_08856 Blastomyces dermatitidis BDDG_08856 I 0.000
PVAR5_0633 Byssochlamys spectabilis PVAR5_0633 I 0.000
A1O1_01819 Capronia coronata A1O1_01819 I 0.000
A1O3_00396 Capronia epimyces A1O3_00396 I 0.000
PV04_04557 Capronia semiimmersa PV04_04557 I 0.000
Z519_08384 Cladophialophora bantiana Z519_08384 I 0.000
G647_03978 Cladophialophora carrionii G647_03978 I 0.000
PV07_05656 Cladophialophora immunda PV07_05656 I 0.000
A1O5_01110 Cladophialophora psammophila A1O5_01110 I 0.000
A1O7_04704 Cladophialophora yegresii A1O7_04704 I 0.000
CIMG_06468 Coccidioides immitis CIMG_06468 I 0.000
CPC735_029590 Coccidioides posadasii CPC735_029590 I 0.000
HMPREF1541_08621 Cyphellophora europaea HMPREF1541_08621 N 0.000
A1O9_01846 Exophiala aquamarina A1O9_01846 I 0.000
HMPREF1120_03270 Exophiala dermatitidis HMPREF1120_03270 I 0.000
PV10_03900 Exophiala mesophila PV10_03900 I 0.000
PV06_06348 Exophiala oligosperma PV06_06348 I 0.000
PV11_01791 Exophiala sideris PV11_01791 I 0.000
PV08_08649 Exophiala spinifera PV08_08649 I 0.000
PV05_02224 Exophiala xenobiotica PV05_02224 I 0.000
Z517_06543 Fonsecaea pedrosoi Z517_06543 I 0.000
HCBG_06419 Histoplasma capsulatum HCBG_06419 I 0.000
MCYG_06710 Microsporum canis MCYG_06710 I 0.000
MGYG_03929 Microsporum gypseum MGYG_03929 I 0.000
PABG_05434 Paracoccidioides brasiliensis PABG_05434 I 0.000
PAAG_12364 Paracoccidioides sp lutzii PAAG_12364 I 0.000
Pc21g15300 Penicillium chrysogenum Pc21g15300 I 0.000
PDIP_48430 Penicillium digitatum PDIP_48430 I 0.000
PEX1_053360 Penicillium expansum PEX1_053360 I 0.000
PITC_049470 Penicillium italicum PITC_049470 I 0.000
PMAA_080950 Penicillium marneffei PMAA_080950 I 0.000
PDE_09881 Penicillium oxalicum PDE_09881 I 0.000
PCH_Pc21g15300 Penicillium rubens PCH_Pc21g15300 I 0.000
U727_00430462281 Penicillium solitum U727_00430462281 I 0.000
Z518_00867 Rhinocladiella mackenziei Z518_00867 I 0.000
PMAA_080950 Talaromyces marneffei PMAA_080950 I 0.000
TSTA_115520 Talaromyces stipitatus TSTA_115520 I 0.000
TEQG_04271 Trichophyton equinum TEQG_04271 I 0.000
H101_02186 Trichophyton interdigitale H101_02186 I 0.000
H102_04486 Trichophyton rubrum H102_04486 I 0.000
H105_04510 Trichophyton soudanense H105_04510 I 0.000
TESG_00349 Trichophyton tonsurans TESG_00349 I 0.000
TRV_05915 Trichophyton verrucosum TRV_05915 I 0.000
UREG_03950 Uncinocarpus reesii UREG_03950 I 0.000