ENSBTAP00000011354-D1 (Bos grunniens)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 ENSBTAP00000011354-D1 T015893_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.785 1.000
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.785 1.000
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.785 1.000
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.785 1.000
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.785 1.000
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.785 0.988
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.720 0.779
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.706 0.837
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.706 0.837
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.706 0.837
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.706 0.837
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.695 0.895
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.694 0.488
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.683 0.686
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.554 0.419
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.521 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000011354-D1 ARID/BRIGHT 244 330

Links

Other ARID/BRIGHT family TFs
Other Bos grunniens TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT5G04760 Arabidopsis thaliana AT5G04760 D 0.000
Bostr.13129s0486 Boechera stricta Bostr.13129s0486 I 0.000
Bo2g006670 Brassica oleracea Bo2g006670 I 0.000
Bo3g002960 Brassica oleracea Bo3g002960 I 0.000
Bo9g178980 Brassica oleracea Bo9g178980 I 0.000
Bra005818 Brassica rapa Bra005818 I 0.000
Bra009432 Brassica rapa Bra009432 I 0.000
Bra028780 Brassica rapa Bra028780 I 0.000
Cagra.5249s0014 Capsella grandiflora Cagra.5249s0014 I 0.000
Carubv10003623m.g Capsella rubella Carubv10003623m.g I 0.000
Ca_05454 Cicer arietinum Ca_05454 I 0.000
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I 0.000
Thhalv10014613m.g Eutrema salsugineum Thhalv10014613m.g I 0.000
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I 0.000
GLYMA10G42450 Glycine max GLYMA10G42450 I 0.000
GLYMA20G24600 Glycine max GLYMA20G24600 I 0.000
Gorai.006G118200 Gossypium raimondii Gorai.006G118200 I 0.000
MDP0000289018 Malus domestica MDP0000289018 I 0.000
MTR_1g111830 Medicago truncatula MTR_1g111830 I 0.000
POPTR_0010s24710 Populus trichocarpa POPTR_0010s24710 I 0.000
Pm017050 Prunus mume Pm017050 I 0.000
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I 0.000
30055.m001589 Ricinus communis 30055.m001589 I 0.000
30155.m001616 Ricinus communis 30155.m001616 I 0.000
SapurV1A.0036s0350 Salix purpurea SapurV1A.0036s0350 I 0.000
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I 0.000
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I 0.000
TCM_041160 Theobroma cacao TCM_041160 I 0.000
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I 0.000