Sakowv30034340m.g (Saccoglossus kowalevskii)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Sakowv30034340m.g T016047_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.719 0.872
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.719 0.872
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.719 0.872
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.719 0.872
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.719 0.872
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.719 0.860
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.701 0.826
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.699 0.500
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.682 0.767
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.668 0.826
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.668 0.826
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.668 0.826
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.668 0.826
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.645 0.709
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.532 0.395
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.499 0.372
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23917324_peptide ARID/BRIGHT 190 276
23917325_peptide ARID/BRIGHT 190 276
23917326_peptide ARID/BRIGHT 139 225
23917327_peptide ARID/BRIGHT 139 225
23917328_peptide ARID/BRIGHT 139 225

Links

Other ARID/BRIGHT family TFs
Other Saccoglossus kowalevskii TFs

368 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL005892 Aedes aegypti AAEL005892 N 0.000
ENSAMEG00000012079 Ailuropoda melanoleuca ENSAMEG00000012079 N 0.000
Alligator_sinensis_CCG008692.1 Alligator sinensis Alligator_sinensis_CCG008692.1 N 0.000
ZNF367 Anolis carolinensis ENSACAG00000012929 N 0.000
AALB010202 Anopheles albimanus AALB010202 N 0.000
AATE010533 Anopheles atroparvus AATE010533 N 0.000
ACUA017310 Anopheles culicifacies ACUA017310 N 0.000
AFAF012856 Anopheles farauti AFAF012856 N 0.000
AGAP010516 Anopheles gambiae AGAP010516 N 0.000
AMEM011646 Anopheles merus AMEM011646 N 0.000
ASTEI07114 Anopheles stephensi ASTEI07114 N 0.000
GB46246 Apis mellifera GB46246 N 0.000
Afo_R003052 Aptenodytes forsteri Afo_R003052 N 0.000
ENSAMXG00000021081 Astyanax mexicanus ENSAMXG00000021081 N 0.000
ACEP13151 Atta cephalotes ACEP13151 N 0.000
ENSP00000364405-D1 Bos grunniens ENSP00000364405-D1 N 0.000
ZNF367 Bos taurus ENSBTAG00000006587 N 0.000
estExt_fgenesh2_pg.C_2650031 Branchiostoma floridae estExt_fgenesh2_pg.C_2650031 N 0.000
Brh_R010325 Buceros rhinoceros Brh_R010325 N 0.000
ZNF367 Callithrix jacchus ENSCJAG00000012580 N 0.000
Aan_R012372 Calypte anna Aan_R012372 N 0.000
Cflo_01591--XP_624136.2_APIME Camponotus floridanus Cflo_01591--XP_624136.2_APIME N 0.000
ZNF367 Canis familiaris ENSCAFG00000001213 N 0.000
CapteG227287 Capitella teleta CapteG227287 N 0.000
ZNF367 Cavia porcellus ENSCPOG00000001515 N 0.000
Cmyd_10009010 Chelonia mydas Cmyd_10009010 N 0.000
ENSCSAG00000006700 Chlorocebus sabaeus ENSCSAG00000006700 N 0.000
ZNF367 Choloepus hoffmanni ENSCHOG00000008195 N 0.000
zf(c2h2)-76 Ciona intestinalis ENSCING00000023622 N 0.000
ENSCSAVG00000003922 Ciona savignyi ENSCSAVG00000003922 N 0.000
CGI_10028872 Crassostrea gigas CGI_10028872 N 0.000
znf367 Danio rerio ENSDARG00000021086 N 0.000
DAPPUDRAFT_51670 Daphnia pulex DAPPUDRAFT_51670 N 0.000
ZNF367 Dasypus novemcinctus ENSDNOG00000035249 N 0.000
YQE_09141 Dendroctonus ponderosae YQE_09141 N 0.000
ENSDORG00000010750 Dipodomys ordii ENSDORG00000010750 N 0.000
ZNF367 Echinops telfairi ENSETEG00000018547 N 0.000
ENSECAG00000009173 Equus caballus ENSECAG00000009173 N 0.000
ZNF367 Felis catus ENSFCAG00000015587 N 0.000
ENSFALG00000003343 Ficedula albicollis ENSFALG00000003343 N 0.000
ENSGMOG00000007617 Gadus morhua ENSGMOG00000007617 N 0.000
ZNF367 Gallus gallus ENSGALG00000012629 N 0.000
znf367 Gasterosteus aculeatus ENSGACG00000006715 N 0.000
Gfo_R009072 Geospiza fortis Gfo_R009072 N 0.000
ZNF367 Gorilla gorilla ENSGGOG00000012699 N 0.000
ZNF367 Homo sapiens ENSG00000165244 N 0.000
ENSSTOG00000005655 Ictidomys tridecemlineatus ENSSTOG00000005655 N 0.000
ISCW000539 Ixodes scapularis ISCW000539 N 0.000
ENSLACG00000011483 Latimeria chalumnae ENSLACG00000011483 N 0.000
ENSLOCG00000009209 Lepisosteus oculatus ENSLOCG00000009209 N 0.000
LDEC003543 Leptinotarsa decemlineata LDEC003543 N 0.000
LotgiG165679 Lottia gigantea LotgiG165679 N 0.000
ZNF367 Loxodonta africana ENSLAFG00000010427 N 0.000
ENSP00000364405 Macaca fascicularis ENSP00000364405 N 0.000
ZNF367 Macaca mulatta ENSMMUG00000007996 N 0.000
ENSMEUG00000009287 Macropus eugenii ENSMEUG00000009287 N 0.000
ZNF367 Meleagris gallopavo ENSMGAG00000006781 N 0.000
ENSMICG00000002011 Microcebus murinus ENSMICG00000002011 N 0.000
ZNF367 Monodelphis domestica ENSMODG00000000499 N 0.000
ENSMPUG00000006868 Mustela putorius furo ENSMPUG00000006868 N 0.000
Zfp367 Mus musculus ENSMUSG00000044934 N 0.000
Myotis_brandtii_Znf367_10015819 Myotis brandtii Myotis_brandtii_Znf367_10015819 N 0.000
ZNF367 Myotis lucifugus ENSMLUG00000017279 N 0.000
NV15465 Nasonia vitripennis NV15465 N 0.000
NEMVEDRAFT_v1g106775 Nematostella vectensis NEMVEDRAFT_v1g106775 N 0.000
ENSNLEG00000016813 Nomascus leucogenys ENSNLEG00000016813 N 0.000
ENSOPRG00000011725 Ochotona princeps ENSOPRG00000011725 N 0.000
ENSONIG00000015208 Oreochromis niloticus ENSONIG00000015208 N 0.000
ENSOCUG00000023005 Oryctolagus cuniculus ENSOCUG00000023005 N 0.000
znf367 Oryzias latipes ENSORLG00000003923 N 0.000
ZNF367 Otolemur garnettii ENSOGAG00000004337 N 0.000
ZNF367 Pan troglodytes ENSPTRG00000021153 N 0.000
ENSPANG00000024635 Papio anubis ENSPANG00000024635 N 0.000
ENSPSIG00000011709 Pelodiscus sinensis ENSPSIG00000011709 N 0.000
ENSPFOG00000007837 Poecilia formosa ENSPFOG00000007837 N 0.000
Pvit_09074 Pogona vitticeps Pvit_09074 N 0.000
ENSPPYG00000019416 Pongo abelii ENSPPYG00000019416 N 0.000
ZNF367 Pteropus vampyrus ENSPVAG00000007651 N 0.000
Zfp367 Rattus norvegicus ENSRNOG00000027234 N 0.000
Sakowv30026002m.g Saccoglossus kowalevskii Sakowv30026002m.g N 0.000
SINV17846 Solenopsis invicta SINV17846 N 0.000
ZNF367 Sorex araneus ENSSARG00000000827 N 0.000
ENSSSCG00000010933 Sus scrofa ENSSSCG00000010933 N 0.000
ZNF367 Taeniopygia guttata ENSTGUG00000000513 N 0.000
znf367 Takifugu rubripes ENSTRUG00000015325 N 0.000
znf367 Tetraodon nigroviridis ENSTNIG00000016674 N 0.000
TC016055 Tribolium castaneum TC016055 N 0.000
TriadG15889 Trichoplax adhaerens TriadG15889 N 0.000
ZNF367 Tupaia belangeri ENSTBEG00000002215 N 0.000
Tal_R006948 Tyto alba Tal_R006948 N 0.000
ZNF367 Vicugna pacos ENSVPAG00000002182 N 0.000
znf367.S Xenopus laevis XB-GENE-986041 N 0.000
znf367 Xenopus tropicalis XB-GENE-986040 N 0.000
ENSXMAG00000015989 Xiphophorus maculatus ENSXMAG00000015989 N 0.000
L798_11919 Zootermopsis nevadensis L798_11919 N 0.000