Bostr.20129s0090 (Boechera stricta)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Bostr.20129s0090 T016056_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3
M06695_2.00 		Arabidopsis thaliana
AAWWHNAAATYAAWW
WWTTRATTTNDWWTT		 Dap-seq
OMalley et al.(2016)
AT2G17410_col_a 		0.667 0.776
ARID6
M06694_2.00 		Arabidopsis thaliana
HAATTRAWTTN
NAAWTYAATTD		 Dap-seq
OMalley et al.(2016)
AT1G20910_col_a 		0.659 0.824
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.20129s0090.1.p ARID/BRIGHT 151 236

Links

Other ARID/BRIGHT family TFs
Other Boechera stricta TFs

153 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00101p00150740 Amborella trichopoda AMTR_s00101p00150740 I 0.000
Aquca_002_01095 Aquilegia coerulea Aquca_002_01095 I 0.000
BRADI2G07050 Brachypodium distachyon BRADI2G07050 N 0.000
PK20225.1 Cannabis sativa PK20225.1 D 0.000
PK07858.1 Cannabis sativa PK07858.1 D 0.000
evm.TU.supercontig_53.118 Carica papaya evm.TU.supercontig_53.118 I 0.000
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I 0.000
Ca_08440 Cicer arietinum Ca_08440 I 0.000
Ca_06386 Cicer arietinum Ca_06386 I 0.000
Cla020671 Citrullus lanatus Cla020671 I 0.000
Ciclev10031900m.g Citrus clementina Ciclev10031900m.g I 0.000
orange1.1g037785m.g Citrus sinensis orange1.1g037785m.g I 0.000
Cucsa.283920 Cucumis sativus Cucsa.283920 I 0.000
Eucgr.G02351 Eucalyptus grandis Eucgr.G02351 I 0.000
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I 0.000
GLYMA02G15780 Glycine max GLYMA02G15780 I 0.000
GLYMA07G32690 Glycine max GLYMA07G32690 I 0.000
GLYMA10G34910 Glycine max GLYMA10G34910 I 0.000
GLYMA20G32660 Glycine max GLYMA20G32660 I 0.000
Gorai.013G079600 Gossypium raimondii Gorai.013G079600 I 0.000
Gorai.008G186700 Gossypium raimondii Gorai.008G186700 I 0.000
MLOC_64390 Hordeum vulgare MLOC_64390 I 0.000
LPERR01G07000 Leersia perrieri LPERR01G07000 I 0.000
Lus10035056.g Linum usitatissimum Lus10035056.g I 0.000
Lus10021711.g Linum usitatissimum Lus10021711.g I 0.000
MDP0000319726 Malus domestica MDP0000319726 I 0.000
MDP0000271420 Malus domestica MDP0000271420 I 0.000
cassava46299.m1 Manihot esculenta cassava46299.m1 I 0.000
cassava16550.m1 Manihot esculenta cassava16550.m1 I 0.000
MTR_4g087920 Medicago truncatula MTR_4g087920 I 0.000
MTR_1g093750 Medicago truncatula MTR_1g093750 I 0.000
mgf017635m Mimulus guttatus mgf017635m I 0.000
GSMUA_Achr11G13440_001 Musa acuminata GSMUA_Achr11G13440_001 I 0.000
GSMUA_Achr2G20040_001 Musa acuminata GSMUA_Achr2G20040_001 N 0.000
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.000
GSMUA_Achr10G14370_001 Musa acuminata GSMUA_Achr10G14370_001 N 0.000
OB01G17480 Oryza brachyantha OB01G17480 I 0.000
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I 0.000
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I 0.000
BGIOSGA003013 Oryza indica BGIOSGA003013 I 0.000
OMERI01G07330 Oryza meridionalis OMERI01G07330 I 0.000
ONIVA01G09540 Oryza nivara ONIVA01G09540 I 0.000
OPUNC01G07130 Oryza punctata OPUNC01G07130 I 0.000
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I 0.000
OS01G0218100 Oryza sativa OS01G0218100 I 0.000
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I 0.000
Pavir.Eb00095 Panicum virgatum Pavir.Eb00095 I 0.000
POPTR_0008s11490 Populus trichocarpa POPTR_0008s11490 I 0.000
POPTR_0010s14010 Populus trichocarpa POPTR_0010s14010 I 0.000
Pm029004 Prunus mume Pm029004 I 0.000
PRUPE_ppa019406mg Prunus persica PRUPE_ppa019406mg I 0.000
29738.m001043 Ricinus communis 29738.m001043 I 0.000
SapurV1A.0079s0530 Salix purpurea SapurV1A.0079s0530 I 0.000
SapurV1A.0304s0070 Salix purpurea SapurV1A.0304s0070 I 0.000
SapurV1A.3056s0010 Salix purpurea SapurV1A.3056s0010 I 0.000
SELMODRAFT_46532 Selaginella moellendorffii SELMODRAFT_46532 I 0.000
SELMODRAFT_56610 Selaginella moellendorffii SELMODRAFT_56610 I 0.000
Si002517m.g Setaria italica Si002517m.g I 0.000
Solyc02g076920.2 Solanum lycopersicum Solyc02g076920.2 I 0.000
PGSC0003DMG400010208 Solanum tuberosum PGSC0003DMG400010208 I 0.000
PGSC0003DMG400007457 Solanum tuberosum PGSC0003DMG400007457 I 0.000
Sb03g001730 Sorghum bicolor Sb03g001730 I 0.000
TCM_011873 Theobroma cacao TCM_011873 I 0.000
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I 0.000
VIT_01s0011g02940 Vitis vinifera VIT_01s0011g02940 I 0.000
GRMZM2G166642 Zea mays GRMZM2G166642 I 0.000
GRMZM2G016039 Zea mays GRMZM2G016039 I 0.000