arid3a (Xenopus tropicalis)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 XB-GENE-945264 T016259_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARID3A
M01658_2.00 		Microcebus murinus
NDATHAWDN
NHWTDATHN		 PBM
Weirauch et al.(2014)
pTH9214 		0.771 0.988
Arid3a
M00115_2.00 		Mus musculus
NDATHADDN
NHHTDATHN		 PBM
Badis et al.(2009)
Arid3a_3875 		0.771 0.988
Arid3a
M01660_2.00 		Mus musculus
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5169 		0.771 0.988
Arid3a
M02651_2.00 		Mus musculus
ATYAAA
TTTRAT		 SELEX
Mathelier et al.(2014)
MA0151.1 		0.771 0.988
ARID3A
M09766_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DRI1_01 		0.771 0.988
ARID3A
M01662_2.00 		Procavia capensis
NNATHDNNN
NNNHDATNN		 PBM
Weirauch et al.(2014)
pTH9384 		0.771 0.977
cfi-1
M01667_2.00 		Caenorhabditis elegans
NNATHDNN
NNHDATNN		 PBM
Weirauch et al.(2014)
pTH5118 		0.733 0.791
retn
M01664_2.00 		Drosophila melanogaster
NDATHRNN
NNYDATHN		 PBM
Weirauch et al.(2014)
pTH5119 		0.720 0.849
retn
M03590_2.00 		Drosophila melanogaster
NNATTRATHN
NDATYAATNN		 SELEX
Nitta et al.(2015)
retn_1 		0.720 0.849
retn
M05899_2.00 		Drosophila melanogaster
AATYAAAM
KTTTRATT		 B1H
Zhu et al.(2011)
retn_SANGER_5_FBgn0004795 		0.720 0.849
retn
M09768_2.00 		Drosophila melanogaster
NNRATTAADN
NHTTAATYNN		 Transfac
Matys et al.(2006)
I$DRI_01 		0.720 0.849
Arid3b
M01659_2.00 		Mus musculus
NNDATTAAWWN
NWWTTAATHNN		 PBM
Weirauch et al.(2014)
pTH4425 		0.709 0.907
DDB_G0275333
M01656_2.00 		Dictyostelium discoideum
NNATHDNNNN
NNNNHDATNN		 PBM
Weirauch et al.(2014)
pTH5168 		0.707 0.500
ACYPI009013
M01655_2.00 		Acyrthosiphon pisum
NDATHAADN
NHTTDATHN		 PBM
Weirauch et al.(2014)
pTH5117 		0.697 0.698
GSPATT00004674001
M01665_2.00 		Paramecium tetraurelia
NNATYHNN
NNDRATNN		 PBM
Weirauch et al.(2014)
pTH5124 		0.540 0.407
TTHERM_00243900
M01666_2.00 		Tetrahymena thermophila
NDDATYANN
NNTRATHHN		 PBM
Weirauch et al.(2014)
pTH5128 		0.508 0.360
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH84503 ARID/BRIGHT 214 300
CAJ82754 ARID/BRIGHT 214 300

Links

Other ARID/BRIGHT family TFs
Other Xenopus tropicalis TFs

369 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g01698 Acanthocheilonema viteae nAv.1.0.1.g01698 I 0.000
nAv.1.0.1.g09235 Acanthocheilonema viteae nAv.1.0.1.g09235 N 0.000
ANCCAN_03474 Ancylostoma caninum ANCCAN_03474 I 0.000
ANCCAN_12539 Ancylostoma caninum ANCCAN_12539 I 0.000
ANCCEY_03357 Ancylostoma ceylanicum ANCCEY_03357 I 0.000
ANCCEY_05105 Ancylostoma ceylanicum ANCCEY_05105 I 0.000
ANCDUO_09404 Ancylostoma duodenale ANCDUO_09404 N 0.000
ACAC_0000239001 Angiostrongylus cantonensis ACAC_0000239001 I 0.000
ACAC_0000409401 Angiostrongylus cantonensis ACAC_0000409401 I 0.000
ACAC_0001180201 Angiostrongylus cantonensis ACAC_0001180201 I 0.000
ACOC_0001326501 Angiostrongylus costaricensis ACOC_0001326501 I 0.000
ASIM_0001301101 Anisakis simplex ASIM_0001301101 I 0.000
ASIM_0001309901 Anisakis simplex ASIM_0001309901 I 0.000
ASU_01199 Ascaris suum ASU_01199 I 0.000
ASU_04305 Ascaris suum ASU_04305 I 0.000
Bm12053 Brugia malayi Bm12053 I 0.000
Bm2389 Brugia malayi Bm2389 I 0.000
Bm4894 Brugia malayi Bm4894 I 0.000
BTMF_0000225801 Brugia timori BTMF_0000225801 N 0.000
BTMF_0001198801 Brugia timori BTMF_0001198801 I 0.000
BXY_0008800 Bursaphelenchus xylophilus BXY_0008800 I 0.000
BXY_0740100 Bursaphelenchus xylophilus BXY_0740100 I 0.000
BXY_1595900 Bursaphelenchus xylophilus BXY_1595900 I 0.000
BXY_1600300 Bursaphelenchus xylophilus BXY_1600300 I 0.000
CBN07936 Caenorhabditis brenneri CBN07936 I 0.000
CBN13729 Caenorhabditis brenneri CBN13729 I 0.000
CBN18797 Caenorhabditis brenneri CBN18797 I 0.000
CBN20828 Caenorhabditis brenneri CBN20828 I 0.000
CBN25890 Caenorhabditis brenneri CBN25890 N 0.000
CBN26258 Caenorhabditis brenneri CBN26258 I 0.000
CBN31048 Caenorhabditis brenneri CBN31048 I 0.000
CBG06052 Caenorhabditis briggsae CBG06052 I 0.000
CBG17744 Caenorhabditis briggsae CBG17744 I 0.000
CBG19594 Caenorhabditis briggsae CBG19594 I 0.000
CBG19604 Caenorhabditis briggsae CBG19604 I 0.000
nhr-7 Caenorhabditis elegans WBGene00003606 D 0.000
nhr-31 Caenorhabditis elegans WBGene00003625 I 0.000
nhr-88 Caenorhabditis elegans WBGene00003678 I 0.000
nhr-119 Caenorhabditis elegans WBGene00003709 I 0.000
CJA04720 Caenorhabditis japonica CJA04720 I 0.000
CJA08328 Caenorhabditis japonica CJA08328 I 0.000
CRE02711 Caenorhabditis remanei CRE02711 I 0.000
CRE06661 Caenorhabditis remanei CRE06661 I 0.000
CRE06667 Caenorhabditis remanei CRE06667 I 0.000
CRE10161 Caenorhabditis remanei CRE10161 I 0.000
CRE12779 Caenorhabditis remanei CRE12779 I 0.000
DICVIV_02348 Dictyocaulus viviparus DICVIV_02348 I 0.000
DICVIV_10822 Dictyocaulus viviparus DICVIV_10822 I 0.000
nDi.2.2.2.g02781 Dirofilaria immitis nDi.2.2.2.g02781 I 0.000
nDi.2.2.2.g03563 Dirofilaria immitis nDi.2.2.2.g03563 I 0.000
DME_0000188101 Dracunculus medinensis DME_0000188101 I 0.000
DME_0000742401 Dracunculus medinensis DME_0000742401 I 0.000
DME_0000960901 Dracunculus medinensis DME_0000960901 I 0.000
EVEC_0001115901 Enterobius vermicularis EVEC_0001115901 I 0.000
GPLIN_000268400 Globodera pallida GPLIN_000268400 I 0.000
GPLIN_001106000 Globodera pallida GPLIN_001106000 I 0.000
GPUH_0000393501 Gongylonema pulchrum GPUH_0000393501 I 0.000
HCOI00435200 Haemonchus contortus HCOI00435200 I 0.000
HCOI00769300 Haemonchus contortus HCOI00769300 I 0.000
HCOI01268300 Haemonchus contortus HCOI01268300 I 0.000
HCOI01406200 Haemonchus contortus HCOI01406200 I 0.000
HCOI01716000 Haemonchus contortus HCOI01716000 I 0.000
HPLM_0001092501 Haemonchus placei HPLM_0001092501 I 0.000
HPLM_0001680701 Haemonchus placei HPLM_0001680701 I 0.000
HPBE_0001043101 Heligmosomoides bakeri HPBE_0001043101 I 0.000
Hba_06510 Heterorhabditis bacteriophora Hba_06510 I 0.000
Hba_14163 Heterorhabditis bacteriophora Hba_14163 I 0.000
Hba_14958 Heterorhabditis bacteriophora Hba_14958 I 0.000
nLs.2.1.2.g08709 Litomosoides sigmodontis nLs.2.1.2.g08709 I 0.000
LOAG_01074 Loa loa LOAG_01074 I 0.000
LOAG_05485 Loa loa LOAG_05485 I 0.000
genemark-nMf.1.1.scaf00140-processed-gene-0.6 Meloidogyne floridensis genemark-nMf.1.1.scaf00140-processed-gene-0.6 I 0.000
maker-nMf.1.1.scaf03124-snap-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf03124-snap-gene-0.5 N 0.000
snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 Meloidogyne floridensis snap_masked-nMf.1.1.scaf24311-processed-gene-0.3 I 0.000
MhA1_Contig984.frz3.gene20 Meloidogyne hapla MhA1_Contig984.frz3.gene20 I 0.000
Minc15420 Meloidogyne incognita Minc15420 I 0.000
NECAME_05125 Necator americanus NECAME_05125 I 0.000
NECAME_12696 Necator americanus NECAME_12696 I 0.000
NBR_0000170601 Nippostrongylus brasiliensis NBR_0000170601 I 0.000
NBR_0001013001 Nippostrongylus brasiliensis NBR_0001013001 I 0.000
NBR_0001432001 Nippostrongylus brasiliensis NBR_0001432001 I 0.000
OESDEN_02652 Oesophagostomum dentatum OESDEN_02652 I 0.000
OESDEN_12257 Oesophagostomum dentatum OESDEN_12257 I 0.000
OESDEN_17109 Oesophagostomum dentatum OESDEN_17109 I 0.000
OFLC_0001511801 Onchocerca flexuosa OFLC_0001511801 I 0.000
nOo.2.0.1.g02048 Onchocerca ochengi nOo.2.0.1.g02048 N 0.000
nOo.2.0.1.g04046 Onchocerca ochengi nOo.2.0.1.g04046 I 0.000
WBGene00248075 Onchocerca volvulus WBGene00248075 I 0.000
PEQ_0000633601 Parascaris equorum PEQ_0000633601 I 0.000
PTRK_0000207700 Parastrongyloides trichosuri PTRK_0000207700 I 0.000
PTRK_0000497300 Parastrongyloides trichosuri PTRK_0000497300 I 0.000
PTRK_0000510500 Parastrongyloides trichosuri PTRK_0000510500 I 0.000
PTRK_0000775900 Parastrongyloides trichosuri PTRK_0000775900 I 0.000
scaffold51-EXSNAP2012.23 Pristionchus exspectatus scaffold51-EXSNAP2012.23 I 0.000
scaffold601-EXSNAP2012.19 Pristionchus exspectatus scaffold601-EXSNAP2012.19 I 0.000
PPA21285 Pristionchus pacificus PPA21285 I 0.000
Ppa-nhr-31 Pristionchus pacificus PPA24219 I 0.000
RSKR_0000832300 Rhabditophanes kr3021 RSKR_0000832300 I 0.000
RSKR_0000868400 Rhabditophanes kr3021 RSKR_0000868400 N 0.000
L596_g20569 Steinernema carpocapsae L596_g20569 I 0.000
L596_g25297 Steinernema carpocapsae L596_g25297 I 0.000
L596_g27086 Steinernema carpocapsae L596_g27086 I 0.000
L596_g3809 Steinernema carpocapsae L596_g3809 I 0.000
L889_g29204 Steinernema feltiae L889_g29204 I 0.000
L889_g5777 Steinernema feltiae L889_g5777 I 0.000
L889_g8361 Steinernema feltiae L889_g8361 I 0.000
L889_g8621 Steinernema feltiae L889_g8621 I 0.000
L893_g27201 Steinernema glaseri L893_g27201 I 0.000
L893_g29388 Steinernema glaseri L893_g29388 I 0.000
L893_g32432 Steinernema glaseri L893_g32432 I 0.000
L893_g6878 Steinernema glaseri L893_g6878 I 0.000
L898_g10316 Steinernema monticolum L898_g10316 I 0.000
L898_g24498 Steinernema monticolum L898_g24498 I 0.000
L898_g2799 Steinernema monticolum L898_g2799 I 0.000
L898_g4801 Steinernema monticolum L898_g4801 I 0.000
SPAL_0000110800 Strongyloides papillosus SPAL_0000110800 I 0.000
SPAL_0000620000 Strongyloides papillosus SPAL_0000620000 I 0.000
SPAL_0001157400 Strongyloides papillosus SPAL_0001157400 I 0.000
SPAL_0001436300 Strongyloides papillosus SPAL_0001436300 I 0.000
SSTP_0000217700 Strongyloides stercoralis SSTP_0000217700 I 0.000
SSTP_0000662400 Strongyloides stercoralis SSTP_0000662400 I 0.000
SSTP_0000831700 Strongyloides stercoralis SSTP_0000831700 I 0.000
SSTP_0001234400 Strongyloides stercoralis SSTP_0001234400 I 0.000
SVE_0137800 Strongyloides venezuelensis SVE_0137800 I 0.000
SVE_0301400 Strongyloides venezuelensis SVE_0301400 I 0.000
SVE_1633700 Strongyloides venezuelensis SVE_1633700 I 0.000
SVE_1965700 Strongyloides venezuelensis SVE_1965700 I 0.000
SMUV_0000212501 Syphacia muris SMUV_0000212501 I 0.000
SMUV_0000859101 Syphacia muris SMUV_0000859101 I 0.000
TELCIR_05080 Teladorsagia circumcincta TELCIR_05080 I 0.000
TELCIR_07363 Teladorsagia circumcincta TELCIR_07363 I 0.000
TCLT_0000173501 Thelazia callipaeda TCLT_0000173501 I 0.000
WUBG_10752 Wuchereria bancrofti WUBG_10752 I 0.000