Bra022376 (Brassica rapa)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Bra022376 T018874_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.921 0.921
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.921 0.921
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra022376.1-P B3 5 100
Bra022376.1-P B3 272 366

Links

Other B3 family TFs
Other Brassica rapa TFs

18 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_00385 Aegilops tauschii F775_00385 I
F775_08627 Aegilops tauschii F775_08627 I
F775_10590 Aegilops tauschii F775_10590 I
F775_23758 Aegilops tauschii F775_23758 I
F775_25597 Aegilops tauschii F775_25597 I
F775_29801 Aegilops tauschii F775_29801 I
F775_43625 Aegilops tauschii F775_43625 I
AMTR_s00001p00266470 Amborella trichopoda AMTR_s00001p00266470 I
Aquca_013_00471 Aquilegia coerulea Aquca_013_00471 I
AGL71 Arabidopsis lyrata Al_scaffold_0008_1558 I
scaffold_801621.1 Arabidopsis lyrata scaffold_801621.1 I
AGL72 Arabidopsis thaliana AT5G51860 I
AGL71 Arabidopsis thaliana AT5G51870 I
Bostr.15774s0334 Boechera stricta Bostr.15774s0334 I
BRADI1G77020 Brachypodium distachyon BRADI1G77020 I
BRADI2G59120 Brachypodium distachyon BRADI2G59120 I
BRADI2G59187 Brachypodium distachyon BRADI2G59187 I
BRADI3G32090 Brachypodium distachyon BRADI3G32090 I
BRADI3G41297 Brachypodium distachyon BRADI3G41297 I
Bo1g040180 Brassica oleracea Bo1g040180 I
Bo2g162920 Brassica oleracea Bo2g162920 I
Bo3g023570 Brassica oleracea Bo3g023570 I
Bo4g108190 Brassica oleracea Bo4g108190 I
Bo7g110310 Brassica oleracea Bo7g110310 I
Bo8g050720 Brassica oleracea Bo8g050720 I
Bo9g093920 Brassica oleracea Bo9g093920 I
Bra010465 Brassica rapa Bra010465 I
Bra013891 Brassica rapa Bra013891 I
Bra014552 Brassica rapa Bra014552 I
Bra028283 Brassica rapa Bra028283 I
Bra029154 Brassica rapa Bra029154 I
Bra029155 Brassica rapa Bra029155 I
Bra029281 Brassica rapa Bra029281 I
Bra029424 Brassica rapa Bra029424 I
Bra035907 Brassica rapa Bra035907 I
Cagra.0277s0030 Capsella grandiflora Cagra.0277s0030 I
Cagra.2248s0020 Capsella grandiflora Cagra.2248s0020 I
Carubv10027093m.g Capsella rubella Carubv10027093m.g I
evm.TU.supercontig_18.166 Carica papaya evm.TU.supercontig_18.166 I
Ca_16423 Cicer arietinum Ca_16423 I
Cucsa.392160 Cucumis sativus Cucsa.392160 I
Thhalv10014716m.g Eutrema salsugineum Thhalv10014716m.g I
Thhalv10015303m.g Eutrema salsugineum Thhalv10015303m.g I
Thhalv10026205m.g Eutrema salsugineum Thhalv10026205m.g I
gene13354-v1.0-hybrid Fragaria vesca gene13354-v1.0-hybrid I
GLYMA10G38541 Glycine max GLYMA10G38541 I
GLYMA20G29300 Glycine max GLYMA20G29300 I
MLOC_12290 Hordeum vulgare MLOC_12290 I
MLOC_76418 Hordeum vulgare MLOC_76418 I
LPERR01G36730 Leersia perrieri LPERR01G36730 I
LPERR02G00370 Leersia perrieri LPERR02G00370 I
LPERR03G01640 Leersia perrieri LPERR03G01640 I
LPERR06G00470 Leersia perrieri LPERR06G00470 I
LPERR08G12860 Leersia perrieri LPERR08G12860 I
LPERR08G18330 Leersia perrieri LPERR08G18330 I
LPERR10G12950 Leersia perrieri LPERR10G12950 I
Lus10036543.g Linum usitatissimum Lus10036543.g I
MTR_8g033220 Medicago truncatula MTR_8g033220 I
mgf005831m Mimulus guttatus mgf005831m I
GSMUA_Achr11G15560_001 Musa acuminata GSMUA_Achr11G15560_001 I
GSMUA_Achr1G24070_001 Musa acuminata GSMUA_Achr1G24070_001 I
GSMUA_Achr6G14760_001 Musa acuminata GSMUA_Achr6G14760_001 I
GSMUA_Achr8G09250_001 Musa acuminata GSMUA_Achr8G09250_001 I
GSMUA_AchrUn_randomG20290_001 Musa acuminata GSMUA_AchrUn_randomG20290_001 I
OBART01G42170 Oryza barthii OBART01G42170 I
OBART02G00360 Oryza barthii OBART02G00360 I
OBART03G01800 Oryza barthii OBART03G01800 I
OBART06G00520 Oryza barthii OBART06G00520 I
OBART08G21560 Oryza barthii OBART08G21560 I
OBART10G16960 Oryza barthii OBART10G16960 I
OB03G11760 Oryza brachyantha OB03G11760 I
OB06G10570 Oryza brachyantha OB06G10570 I
OB08G28340 Oryza brachyantha OB08G28340 I
OB10G24040 Oryza brachyantha OB10G24040 I
ORGLA01G0361900 Oryza glaberrima ORGLA01G0361900 I
ORGLA02G0003200 Oryza glaberrima ORGLA02G0003200 I
ORGLA03G0015400 Oryza glaberrima ORGLA03G0015400 I
ORGLA06G0005200 Oryza glaberrima ORGLA06G0005200 I
ORGLA08G0229900 Oryza glaberrima ORGLA08G0229900 I
ORGLA10G0119200 Oryza glaberrima ORGLA10G0119200 I
OGLUM01G46440 Oryza glumaepatula OGLUM01G46440 I
OGLUM02G00350 Oryza glumaepatula OGLUM02G00350 I
OGLUM03G01750 Oryza glumaepatula OGLUM03G01750 I
OGLUM06G00450 Oryza glumaepatula OGLUM06G00450 I
OGLUM08G22840 Oryza glumaepatula OGLUM08G22840 I
OGLUM10G16960 Oryza glumaepatula OGLUM10G16960 I
BGIOSGA005076 Oryza indica BGIOSGA005076 I
BGIOSGA007333 Oryza indica BGIOSGA007333 I
BGIOSGA007336 Oryza indica BGIOSGA007336 I
BGIOSGA018621 Oryza indica BGIOSGA018621 I
BGIOSGA022154 Oryza indica BGIOSGA022154 I
BGIOSGA029053 Oryza indica BGIOSGA029053 I
MADS56 Oryza indica BGIOSGA033356 I
OLONG_001786 Oryza longistaminata OLONG_001786 I
OLONG_004735 Oryza longistaminata OLONG_004735 I
OLONG_010918 Oryza longistaminata OLONG_010918 I
OLONG_017665 Oryza longistaminata OLONG_017665 I
OMERI01G39210 Oryza meridionalis OMERI01G39210 I
OMERI02G09250 Oryza meridionalis OMERI02G09250 I
OMERI03G01730 Oryza meridionalis OMERI03G01730 I
OMERI06G00470 Oryza meridionalis OMERI06G00470 I
OMERI06G13650 Oryza meridionalis OMERI06G13650 I
OMERI10G13430 Oryza meridionalis OMERI10G13430 I
ONIVA01G48250 Oryza nivara ONIVA01G48250 I
ONIVA02G00370 Oryza nivara ONIVA02G00370 I
ONIVA03G01420 Oryza nivara ONIVA03G01420 I
ONIVA06G00530 Oryza nivara ONIVA06G00530 I
ONIVA08G24570 Oryza nivara ONIVA08G24570 I
ONIVA10G18680 Oryza nivara ONIVA10G18680 I
OPUNC01G41110 Oryza punctata OPUNC01G41110 I
OPUNC02G00040 Oryza punctata OPUNC02G00040 I
OPUNC03G01630 Oryza punctata OPUNC03G01630 I
OPUNC06G00450 Oryza punctata OPUNC06G00450 I
OPUNC08G17110 Oryza punctata OPUNC08G17110 I
OPUNC08G18260 Oryza punctata OPUNC08G18260 I
OPUNC08G19670 Oryza punctata OPUNC08G19670 I
OPUNC10G15300 Oryza punctata OPUNC10G15300 I
ORUFI02G00390 Oryza rufipogon ORUFI02G00390 I
ORUFI03G01510 Oryza rufipogon ORUFI03G01510 I
ORUFI05G07100 Oryza rufipogon ORUFI05G07100 I
ORUFI06G00550 Oryza rufipogon ORUFI06G00550 I
ORUFI08G24040 Oryza rufipogon ORUFI08G24040 I
ORUFI10G17990 Oryza rufipogon ORUFI10G17990 I
OS02G0104100 Oryza sativa OS02G0104100 I
MADS50 Oryza sativa OS03G0122600 D
OS05G0203800 Oryza sativa OS05G0203800 I
OS06G0108500 Oryza sativa OS06G0108500 I
OS08G0531900 Oryza sativa OS08G0531900 I
MADS56 Oryza sativa OS10G0536100 I
Pavir.Aa03568 Panicum virgatum Pavir.Aa03568 I
Pavir.Ab00058 Panicum virgatum Pavir.Ab00058 I
Pavir.Eb00729 Panicum virgatum Pavir.Eb00729 I
Pavir.Fa00163 Panicum virgatum Pavir.Fa00163 I
Pavir.Ia04538 Panicum virgatum Pavir.Ia04538 I
Pavir.Ib00012 Panicum virgatum Pavir.Ib00012 I
Pavir.J02739 Panicum virgatum Pavir.J02739 I
Pavir.J08622 Panicum virgatum Pavir.J08622 I
Pavir.J26790 Panicum virgatum Pavir.J26790 I
Q9ATE7_PETHY Petunia x hybrida Q9ATE7_PETHY D
POPTR_0014s07020 Populus trichocarpa POPTR_0014s07020 I
Pm018089 Prunus mume Pm018089 I
PRUPE_ppa014428mg Prunus persica PRUPE_ppa014428mg I
SapurV1A.0578s0130 Salix purpurea SapurV1A.0578s0130 I
Si004582m.g Setaria italica Si004582m.g I
Si005133m.g Setaria italica Si005133m.g I
Si008672m.g Setaria italica Si008672m.g I
Si014540m.g Setaria italica Si014540m.g I
Si015525m.g Setaria italica Si015525m.g I
Si019985m.g Setaria italica Si019985m.g I
Si038257m.g Setaria italica Si038257m.g I
Solyc06g035570.1 Solanum lycopersicum Solyc06g035570.1 I
Solyc08g080100.2 Solanum lycopersicum Solyc08g080100.2 I
PGSC0003DMG400022748 Solanum tuberosum PGSC0003DMG400022748 I
PGSC0003DMG400025279 Solanum tuberosum PGSC0003DMG400025279 I
Sb01g030570 Sorghum bicolor Sb01g030570 I
Sb01g049020 Sorghum bicolor Sb01g049020 I
Sb03g006210 Sorghum bicolor Sb03g006210 I
Sb04g000500 Sorghum bicolor Sb04g000500 I
Sb07g026180 Sorghum bicolor Sb07g026180 I
Traes_1AL_6B108514B Triticum aestivum Traes_1AL_6B108514B I
Traes_1AL_6F5982F88 Triticum aestivum Traes_1AL_6F5982F88 I
Traes_1BL_F1D5BF5F8 Triticum aestivum Traes_1BL_F1D5BF5F8 I
Traes_1DL_D5BBCA2D0 Triticum aestivum Traes_1DL_D5BBCA2D0 I
TRAES3BF009000010CFD_g Triticum aestivum TRAES3BF009000010CFD_g I
TRAES3BF009000040CFD_g Triticum aestivum TRAES3BF009000040CFD_g I
Traes_4BL_B8FFB0854 Triticum aestivum Traes_4BL_B8FFB0854 I
Traes_4DL_5633C0561 Triticum aestivum Traes_4DL_5633C0561 I
Traes_5BS_A19FD8E34 Triticum aestivum Traes_5BS_A19FD8E34 I
Traes_6AS_D6ABA1D79 Triticum aestivum Traes_6AS_D6ABA1D79 I
Traes_6DS_2BAD7A60A Triticum aestivum Traes_6DS_2BAD7A60A I
Traes_7AS_F568FCBF1 Triticum aestivum Traes_7AS_F568FCBF1 I
Traes_7BS_4D5DE99CC Triticum aestivum Traes_7BS_4D5DE99CC I
Traes_7DS_366A869CF Triticum aestivum Traes_7DS_366A869CF I
Traes_7DS_4DF7EB08F Triticum aestivum Traes_7DS_4DF7EB08F I
TRIUR3_18962 Triticum urartu TRIUR3_18962 I
TRIUR3_19056 Triticum urartu TRIUR3_19056 I
TRIUR3_20985 Triticum urartu TRIUR3_20985 I
TRIUR3_21732 Triticum urartu TRIUR3_21732 I
TRIUR3_22964 Triticum urartu TRIUR3_22964 I
TRIUR3_28473 Triticum urartu TRIUR3_28473 I
TRIUR3_30073 Triticum urartu TRIUR3_30073 I
TRIUR3_30872 Triticum urartu TRIUR3_30872 I
TRIUR3_32699 Triticum urartu TRIUR3_32699 I
VIT_15s0048g01240 Vitis vinifera VIT_15s0048g01240 I
GRMZM2G010669 Zea mays GRMZM2G010669 I
GRMZM2G026223 Zea mays GRMZM2G026223 I
GRMZM2G070034 Zea mays GRMZM2G070034 I
GRMZM2G098986 Zea mays GRMZM2G098986 I
GRMZM2G171365 Zea mays GRMZM2G171365 I
GRMZM2G320549 Zea mays GRMZM2G320549 I