RTV1 (Arabidopsis lyrata)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 scaffold_104641.1 T021153_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
REM19
M06702_2.00 		Arabidopsis thaliana
TKWTTTTTTTTTKKY
RMMAAAAAAAAAWMA		 Dap-seq
OMalley et al.(2016)
REM19_col_a 		0.979 0.979
REM19
M06703_2.00 		Arabidopsis thaliana
NWBTTTTTTTTTTTTKKHHWH
DWDDMMAAAAAAAAAAAAVWN		 Dap-seq
OMalley et al.(2016)
REM19_colamp_a 		0.979 0.979
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold_104641.1 B3 129 223

Links

Other B3 family TFs
Other Arabidopsis lyrata TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GF23684 Drosophila ananassae FBgn0100678 N
GH14829 Drosophila grimshawi FBgn0122305 N
CG45071 Drosophila melanogaster FBgn0266441 N
GI13933 Drosophila mojavensis FBgn0136687 N
GL24720 Drosophila persimilis FBgn0162308 N
GA23623 Drosophila pseudoobscura FBgn0245023 N
GM25504 Drosophila sechellia FBgn0180361 N
GD14523 Drosophila simulans FBgn0186205 N
GJ13723 Drosophila virilis FBgn0200944 N
GE22048 Drosophila yakuba FBgn0239280 N
LCUP006555 Lucilia cuprina LCUP006555 N