evm.TU.supercontig_62.76 (Carica papaya)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 evm.TU.supercontig_62.76 T023146_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.825 0.825
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.825 0.825
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_62.76 B3 5 75
evm.model.supercontig_62.76 B3 229 323

Links

Other B3 family TFs
Other Carica papaya TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000006596 Astyanax mexicanus ENSAMXG00000006596 N
ENSAMXG00000010401 Astyanax mexicanus ENSAMXG00000010401 N
vezf1a Danio rerio ENSDARG00000008247 N
vezf1b Danio rerio ENSDARG00000061030 N
ENSGMOG00000008935 Gadus morhua ENSGMOG00000008935 N
ENSGMOG00000018159 Gadus morhua ENSGMOG00000018159 N
vezf1b Gasterosteus aculeatus ENSGACG00000000419 N
vezf1a Gasterosteus aculeatus ENSGACG00000020304 N
ENSLOCG00000004823 Lepisosteus oculatus ENSLOCG00000004823 N
ENSONIG00000001964 Oreochromis niloticus ENSONIG00000001964 N
ENSONIG00000006414 Oreochromis niloticus ENSONIG00000006414 N
vezf1a Oryzias latipes ENSORLG00000009698 N
ENSPFOG00000019322 Poecilia formosa ENSPFOG00000019322 N
vezf1a Takifugu rubripes ENSTRUG00000011480 N
vezf1a Tetraodon nigroviridis ENSTNIG00000011836 N