Gorai.012G150900 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.012G150900 T023401_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VRN1
M06704_2.00 		Arabidopsis thaliana
WWWTTTTTTTTTTTTTTTTTTTTTTTKTN
NAMAAAAAAAAAAAAAAAAAAAAAAAWWW		 Dap-seq
OMalley et al.(2016)
VRN1_col_a 		0.742 0.742
VRN1
M06705_2.00 		Arabidopsis thaliana
NWBNTTTTTTTTTTTTKKB
VMMAAAAAAAAAAAANVWN		 Dap-seq
OMalley et al.(2016)
VRN1_colamp_a 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.012G150900.1 B3 25 110
Gorai.012G150900.1 B3 252 347
Gorai.012G150900.2 B3 5 97
Gorai.012G150900.2 B3 239 334
Gorai.012G150900.3 B3 8 93
Gorai.012G150900.3 B3 235 330

Links

Other B3 family TFs
Other Gossypium raimondii TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
FFUJ_09085 Fusarium fujikuroi FFUJ_09085 I
FGRRES_17152 Fusarium graminearum FGRRES_17152 D
FOXG_08967 Fusarium oxysporum FOXG_08967 I
FVEG_06579 Fusarium verticillioides FVEG_06579 I
NCU05257 Neurospora crassa NCU05257 N
estExt_Genewise1.C_120208 Neurospora discreta estExt_Genewise1.C_120208 I
NEUTE1DRAFT_145815 Neurospora tetrasperma NEUTE1DRAFT_145815 N