Bra035888 (Brassica rapa)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 Bra035888 T031550_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.896 0.860
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.896 0.860
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.883 0.760
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.876 0.720
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.869 0.800
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.869 0.760
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.869 0.740
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.869 0.740
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.857 0.760
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.857 0.740
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.840 0.820
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.840 0.800
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.840 0.800
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra035888.1-P bHLH 160 209

Links

Other bHLH family TFs
Other Brassica rapa TFs

812 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_12062 Aegilops tauschii F775_12062 N
F775_12405 Aegilops tauschii F775_12405 N
OBART04G26980 Oryza barthii OBART04G26980 N
OB04G33830 Oryza brachyantha OB04G33830 N
ORGLA04G0234000 Oryza glaberrima ORGLA04G0234000 N
OGLUM04G26950 Oryza glumaepatula OGLUM04G26950 N
ILI1 Oryza indica BGIOSGA014246 N
OMERI04G22430 Oryza meridionalis OMERI04G22430 N
OPUNC04G24510 Oryza punctata OPUNC04G24510 N
ORUFI04G28640 Oryza rufipogon ORUFI04G28640 N
BHLH154 Oryza sativa OS04G0641700 N
Pavir.Ga00332 Panicum virgatum Pavir.Ga00332 N
Pavir.J06936 Panicum virgatum Pavir.J06936 N
Si011424m.g Setaria italica Si011424m.g N
Sb06g030340 Sorghum bicolor Sb06g030340 N
Traes_2AL_7FEF10153 Triticum aestivum Traes_2AL_7FEF10153 N
Traes_2BL_59B9199D9 Triticum aestivum Traes_2BL_59B9199D9 N
Traes_2BL_E2B676D40 Triticum aestivum Traes_2BL_E2B676D40 N
Traes_2DL_5C8D8DACA Triticum aestivum Traes_2DL_5C8D8DACA N
Traes_2DL_C417E5A19 Triticum aestivum Traes_2DL_C417E5A19 N
TRIUR3_27184 Triticum urartu TRIUR3_27184 N