bhlhe41 (Oryzias latipes)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSORLG00000011401 T036429_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.889 0.944
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.889 0.944
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.889 0.944
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.889 0.944
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.889 0.944
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.889 0.944
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.889 0.944
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.889 0.926
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.889 0.926
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.889 0.926
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.889 0.926
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.889 0.926
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.889 0.926
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.889 0.926
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.889 0.926
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.889 0.926
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.889 0.926
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.889 0.926
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.889 0.926
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.889 0.926
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.889 0.926
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.889 0.926
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000014277 bHLH 48 102

Links

Other bHLH family TFs
Other Oryzias latipes TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_030_00013 Aquilegia coerulea Aquca_030_00013 I
anac053 Arabidopsis lyrata fgenesh2_kg.3__1085__AT3G10500.1 I
NAC2 Arabidopsis lyrata scaffold_600382.1 I
NAC078 Arabidopsis thaliana AT5G04410 D
NAC053 Arabidopsis thaliana AT3G10500 D
Bostr.22252s0010 Boechera stricta Bostr.22252s0010 I
Bostr.2128s0007 Boechera stricta Bostr.2128s0007 I
Bo1g143830 Brassica oleracea Bo1g143830 I
Bo9g180050 Brassica oleracea Bo9g180050 I
Bra005804 Brassica rapa Bra005804 I
Bra009456 Brassica rapa Bra009456 I
Bra028790 Brassica rapa Bra028790 I
Bra034120 Brassica rapa Bra034120 I
PK11467.1 Cannabis sativa PK11467.1 I
Cagra.9217s0021 Capsella grandiflora Cagra.9217s0021 I
Cagra.0834s0027 Capsella grandiflora Cagra.0834s0027 I
Carubv10013370m.g Capsella rubella Carubv10013370m.g I
Cla013942 Citrullus lanatus Cla013942 I
Cla020837 Citrullus lanatus Cla020837 I
Ciclev10031147m.g Citrus clementina Ciclev10031147m.g I
orange1.1g007598m.g Citrus sinensis orange1.1g007598m.g I
Cucsa.186150 Cucumis sativus Cucsa.186150 I
Cucsa.308770 Cucumis sativus Cucsa.308770 I
Thhalv10020438m.g Eutrema salsugineum Thhalv10020438m.g I
Thhalv10013110m.g Eutrema salsugineum Thhalv10013110m.g I
Gorai.009G309000 Gossypium raimondii Gorai.009G309000 I
MDP0000695714 Malus domestica MDP0000695714 I
MDP0000457996 Malus domestica MDP0000457996 I
cassava22911.valid.m1 Manihot esculenta cassava22911.valid.m1 I
POPTR_0010s23650 Populus trichocarpa POPTR_0010s23650 I
POPTR_0008s03170 Populus trichocarpa POPTR_0008s03170 I
Pm017550 Prunus mume Pm017550 I
PRUPE_ppa003239mg Prunus persica PRUPE_ppa003239mg I
28872.m000248 Ricinus communis 28872.m000248 I
SapurV1A.0213s0330 Salix purpurea SapurV1A.0213s0330 I
SapurV1A.0394s0050 Salix purpurea SapurV1A.0394s0050 I
TCM_043360 Theobroma cacao TCM_043360 I
VIT_13s0019g05240 Vitis vinifera VIT_13s0019g05240 I