bhlhe40 (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000007338 T037726_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.890 0.981
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.890 0.981
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.890 0.981
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.890 0.981
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.890 0.981
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.890 0.981
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.890 0.981
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.890 0.981
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.890 0.981
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.890 0.981
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.890 0.981
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.890 0.981
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.890 0.981
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.890 0.981
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.890 0.981
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.890 0.963
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.890 0.963
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.890 0.963
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.890 0.963
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.890 0.963
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.890 0.963
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.890 0.963
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000010143 bHLH 51 105

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_017_00582 Aquilegia coerulea Aquca_017_00582 I
BZO2H3 Arabidopsis lyrata fgenesh2_kg.6__2797__AT5G28770.2 I
BZIP63 Arabidopsis thaliana AT5G28770 D
Bo2g151850 Brassica oleracea Bo2g151850 I
Bo7g093030 Brassica oleracea Bo7g093030 I
Bra010010 Brassica rapa Bra010010 I
Bra020620 Brassica rapa Bra020620 I
PK05128.1 Cannabis sativa PK05128.1 D
Cagra.5456s0001 Capsella grandiflora Cagra.5456s0001 I
Carubv10001450m.g Capsella rubella Carubv10001450m.g I
Ca_03753 Cicer arietinum Ca_03753 I
Ca_01234 Cicer arietinum Ca_01234 I
Cla011478 Citrullus lanatus Cla011478 I
Cla020112 Citrullus lanatus Cla020112 I
Ciclev10001051m.g Citrus clementina Ciclev10001051m.g I
Ciclev10020133m.g Citrus clementina Ciclev10020133m.g I
orange1.1g012287m.g Citrus sinensis orange1.1g012287m.g I
orange1.1g013166m.g Citrus sinensis orange1.1g013166m.g I
Cucsa.289120 Cucumis sativus Cucsa.289120 I
Cucsa.133290 Cucumis sativus Cucsa.133290 I
Eucgr.H04338 Eucalyptus grandis Eucgr.H04338 I
Thhalv10004611m.g Eutrema salsugineum Thhalv10004611m.g I
gene16561-v1.0-hybrid Fragaria vesca gene16561-v1.0-hybrid I
GLYMA20G36750 Glycine max GLYMA20G36750 I
GLYMA19G43420 Glycine max GLYMA19G43420 I
GLYMA10G30410 Glycine max GLYMA10G30410 I
GLYMA03G40730 Glycine max GLYMA03G40730 I
Gorai.007G277300 Gossypium raimondii Gorai.007G277300 I
Gorai.004G246700 Gossypium raimondii Gorai.004G246700 I
LPERR12G15130 Leersia perrieri LPERR12G15130 I
Lus10006590.g Linum usitatissimum Lus10006590.g I
Lus10015913.g Linum usitatissimum Lus10015913.g I
chr5.LjT29J15.10.nc Lotus japonicus chr5.LjT29J15.10.nc I
MDP0000270365 Malus domestica MDP0000270365 I
cassava18571.valid.m1 Manihot esculenta cassava18571.valid.m1 I
cassava22706.valid.m1 Manihot esculenta cassava22706.valid.m1 I
MTR_1g080920 Medicago truncatula MTR_1g080920 I
MTR_7g115120 Medicago truncatula MTR_7g115120 I
mgf009803m Mimulus guttatus mgf009803m I
mgf012838m Mimulus guttatus mgf012838m I
GSMUA_Achr4G28530_001 Musa acuminata GSMUA_Achr4G28530_001 I
OBART12G18120 Oryza barthii OBART12G18120 I
OB12G24740 Oryza brachyantha OB12G24740 I
OGLUM12G19660 Oryza glumaepatula OGLUM12G19660 I
BGIOSGA037742 Oryza indica BGIOSGA037742 I
ONIVA12G16860 Oryza nivara ONIVA12G16860 I
OPUNC12G16360 Oryza punctata OPUNC12G16360 I
ORUFI12G20050 Oryza rufipogon ORUFI12G20050 I
OS12G0601800 Oryza sativa OS12G0601800 I
CPRF2_PETCR Petroselinum crispum CPRF2_PETCR D
estExt_Genewise1.C_2060077 Physcomitrella patens estExt_Genewise1.C_2060077 D
POPTR_0013s03800 Populus trichocarpa POPTR_0013s03800 I
POPTR_0005s05470 Populus trichocarpa POPTR_0005s05470 I
Pm003522 Prunus mume Pm003522 I
PRUPE_ppa005585mg Prunus persica PRUPE_ppa005585mg I
29598.m000468 Ricinus communis 29598.m000468 I
SapurV1A.0110s0140 Salix purpurea SapurV1A.0110s0140 I
SapurV1A.0729s0180 Salix purpurea SapurV1A.0729s0180 I
Solyc01g097330.2 Solanum lycopersicum Solyc01g097330.2 I
PGSC0003DMG400019455 Solanum tuberosum PGSC0003DMG400019455 I
TCM_026349 Theobroma cacao TCM_026349 I
ATBZIP9 Vitis vinifera VIT_04s0008g02750 I
BZO2H3 Vitis vinifera VIT_14s0030g02200 I