mitfa (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000007360 T037727_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Mitf
M01741_2.00 		Mus musculus
NCDCGTGAYN
NRTCACGHGN		 PBM
Weirauch et al.(2014)
pTH5465 		0.914 0.981
MITF
M08058_2.00 		Homo sapiens
NNNDRTCACGTGAYHNNN
NNNDRTCACGTGAYHNNN		 ChIP-seq
Mathelier et al.(2014)
MA0620.2 		0.914 0.981
MITF
M08740_2.00 		Homo sapiens
YCAYGTGACH
DGTCACRTGR		 Misc
Kulakovskiy et al.(2013)
MITF_HUMAN.H11MO.0.A 		0.914 0.981
Mitf
M08765_2.00 		Mus musculus
BCHYGTGACY
RGTCACRDGV		 Misc
Kulakovskiy et al.(2013)
MITF_MOUSE.H11MO.0.A 		0.914 0.981
Mitf
M09475_2.00 		Mus musculus
GTCACRWGVB
VBCWYGTGAC		 Misc
Heinz et al.(2010)
MastCells-MITF_GSE48085 		0.914 0.981
MITF
M09880_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MITF_Q4 		0.914 0.981
MITF
M09881_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MITF_Q6 		0.914 0.981
Tfe3
M01715_2.00 		Mus musculus
NCDCRTGAYN
NRTCAYGHGN		 PBM
Weirauch et al.(2014)
pTH5057 		0.914 0.963
Tfe3
M05833_2.00 		Mus musculus
CACGTGAY
RTCACGTG		 SMiLE-seq
Isakova et al.(2017)
TFE3 		0.914 0.963
Tfe3
M08743_2.00 		Mus musculus
TCACGTGACH
DGTCACGTGA		 Misc
Kulakovskiy et al.(2013)
TFE3_MOUSE.H11MO.0.A 		0.914 0.963
Tfe3
M09884_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TFEA_01 		0.914 0.963
TFE3
M02773_2.00 		Homo sapiens
VNCACGTGMY
RKCACGTGNB		 SELEX
Jolma et al.(2013)
TFE3_1 		0.871 0.944
TFE3
M04058_2.00 		Homo sapiens
YVCACGTGAYN
NRTCACGTGBR		 SELEX
Yin et al.(2017)
TFE3_eDBD_HT-SELEX 		0.871 0.944
TFE3
M08709_2.00 		Homo sapiens
TCACGTGACH
DGTCACGTGA		 Misc
Kulakovskiy et al.(2013)
TFE3_HUMAN.H11MO.0.B 		0.871 0.944
TFE3
M09790_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TFEA_Q6 		0.871 0.944
TFE3
M04059_2.00 		Homo sapiens
NRTCACATGBB
VVCATGTGAYN		 SELEX
Yin et al.(2017)
TFE3_eDBD_Methyl-HT-SELEX 		0.871 0.944
Tfec
M00755_2.00 		Mus musculus
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2013)
pTH2885 		0.870 0.926
Tfec
M01736_2.00 		Mus musculus
NCNCRTGVYN
NRBCAYGNGN		 PBM
Weirauch et al.(2014)
pTH5065 		0.870 0.926
TFEC
M02778_2.00 		Homo sapiens
RNCACRTGAB
VTCAYGTGNY		 SELEX
Jolma et al.(2013)
TFEC_1 		0.870 0.907
TFEC
M04078_2.00 		Homo sapiens
NVCACGTGACN
NGTCACGTGBN		 SELEX
Yin et al.(2017)
TFEC_eDBD_HT-SELEX 		0.870 0.907
TFEC
M04079_2.00 		Homo sapiens
VNCATGTGAYN
NRTCACATGNB		 SELEX
Yin et al.(2017)
TFEC_eDBD_Methyl-HT-SELEX 		0.870 0.907
Tfeb
M01728_2.00 		Mus musculus
CWCGTGAY
RTCACGWG		 PBM
Weirauch et al.(2014)
pTH5072 		0.855 0.889
TFEB
M02781_2.00 		Homo sapiens
RNCACGTGAY
RTCACGTGNY		 SELEX
Jolma et al.(2013)
TFEB_1 		0.855 0.889
TFEB
M02727_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Jolma et al.(2010)
TFEB_dimer 		0.855 0.889
TFEB
M04088_2.00 		Homo sapiens
YVCACGTGAYN
NRTCACGTGBR		 SELEX
Yin et al.(2017)
TFEB_eDBD_HT-SELEX 		0.855 0.889
TFEB
M08718_2.00 		Homo sapiens
CACGTGAYY
RRTCACGTG		 Misc
Kulakovskiy et al.(2013)
TFEB_HUMAN.H11MO.0.C 		0.855 0.889
Tfeb
M08753_2.00 		Mus musculus
CACGTGAYY
RRTCACGTG		 Misc
Kulakovskiy et al.(2013)
TFEB_MOUSE.H11MO.0.C 		0.855 0.889
TFEB
M04089_2.00 		Homo sapiens
VNCATGTGAYN
NRTCACATGNB		 SELEX
Yin et al.(2017)
TFEB_eDBD_Methyl-HT-SELEX 		0.855 0.889
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000010165 bHLH 191 244

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_02130 Aegilops tauschii F775_02130 N
BRADI3G38360 Brachypodium distachyon BRADI3G38360 N
Eucgr.F02138 Eucalyptus grandis Eucgr.F02138 N
MLOC_2366 Hordeum vulgare MLOC_2366 N
MLOC_70640 Hordeum vulgare MLOC_70640 N
LPERR01G07000 Leersia perrieri LPERR01G07000 I
LPERR08G15030 Leersia perrieri LPERR08G15030 N
mgf022146m Mimulus guttatus mgf022146m N
GSMUA_Achr3G06780_001 Musa acuminata GSMUA_Achr3G06780_001 N
GSMUA_Achr9G15140_001 Musa acuminata GSMUA_Achr9G15140_001 N
OBART09G13210 Oryza barthii OBART09G13210 N
OB08G25230 Oryza brachyantha OB08G25230 N
ORGLA08G0157100 Oryza glaberrima ORGLA08G0157100 N
OGLUM08G19000 Oryza glumaepatula OGLUM08G19000 N
BGIOSGA030928 Oryza indica BGIOSGA030928 N
BGIOSGA028855 Oryza indica BGIOSGA028855 N
OMERI06G24090 Oryza meridionalis OMERI06G24090 I
OMERI09G10230 Oryza meridionalis OMERI09G10230 N
ONIVA08G20180 Oryza nivara ONIVA08G20180 N
ONIVA09G13640 Oryza nivara ONIVA09G13640 N
OPUNC08G16020 Oryza punctata OPUNC08G16020 N
OPUNC09G11520 Oryza punctata OPUNC09G11520 I
ORUFI08G20260 Oryza rufipogon ORUFI08G20260 N
ORUFI09G14130 Oryza rufipogon ORUFI09G14130 N
OS08G0477900 Oryza sativa OS08G0477900 N
Pavir.J25149 Panicum virgatum Pavir.J25149 N
Pavir.J16121 Panicum virgatum Pavir.J16121 N
Pavir.Fa00651 Panicum virgatum Pavir.Fa00651 N
Pavir.Ba01985 Panicum virgatum Pavir.Ba01985 N
29908.m006255 Ricinus communis 29908.m006255 N
Si014356m.g Setaria italica Si014356m.g N
Si033077m.g Setaria italica Si033077m.g N
Solyc02g076920.2 Solanum lycopersicum Solyc02g076920.2 I
PGSC0003DMG400010208 Solanum tuberosum PGSC0003DMG400010208 I
Sb07g023280 Sorghum bicolor Sb07g023280 N
Sb02g026920 Sorghum bicolor Sb02g026920 N
Traes_2AL_7A37B5232 Triticum aestivum Traes_2AL_7A37B5232 N
Traes_2BL_649181D92 Triticum aestivum Traes_2BL_649181D92 N
Traes_2DL_5F0BD9D6F Triticum aestivum Traes_2DL_5F0BD9D6F N
Traes_5BL_553BE31FE Triticum aestivum Traes_5BL_553BE31FE N
TRIUR3_09991 Triticum urartu TRIUR3_09991 N
GRMZM2G082630 Zea mays GRMZM2G082630 N
GRMZM2G113257 Zea mays GRMZM2G113257 N
GRMZM2G145146 Zea mays GRMZM2G145146 N