ascl1b (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000011380 T037746_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ASCL1
M04135_2.00 		Homo sapiens
NRCASSTGYN
NRCASSTGYN		 SELEX
Yin et al.(2017)
ASCL1_eDBD_HT-SELEX 		0.859 0.920
ASCL1
M08055_2.00 		Homo sapiens
NNRGCAGCTGSNN
NNSCAGCTGCYNN		 ChIP-seq
Mathelier et al.(2014)
MA1100.1 		0.859 0.920
ASCL1
M08730_2.00 		Homo sapiens
NNVCASCTGCYBYN
NRVRGCAGSTGBNN		 Misc
Kulakovskiy et al.(2013)
ASCL1_HUMAN.H11MO.0.A 		0.859 0.920
Ascl1
M08748_2.00 		Mus musculus
BHSCASCTGCYBBN
NVVRGCAGSTGSDV		 Misc
Kulakovskiy et al.(2013)
ASCL1_MOUSE.H11MO.0.A 		0.859 0.920
Ascl1
M09464_2.00 		Mus musculus
NVCABCTGBBNN
NNVVCAGVTGBN		 Misc
Heinz et al.(2010)
NeuralTubes-Ascl1_GSE55840 		0.859 0.920
ASCL1
M09855_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6_01 		0.859 0.920
ASCL1
M09856_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6_02 		0.859 0.920
ASCL1
M09857_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MASH1_Q6 		0.859 0.920
ASCL1
M04136_2.00 		Homo sapiens
NRCAGCTGYN
NRCAGCTGYN		 SELEX
Yin et al.(2017)
ASCL1_eDBD_Methyl-HT-SELEX 		0.859 0.920
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000014325 bHLH 54 104

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSCSAG00000011054 Chlorocebus sabaeus ENSCSAG00000011054 I
GZF1 Homo sapiens ENSG00000125812 D
ENSP00000338290 Macaca fascicularis ENSP00000338290 I
GZF1 Macaca mulatta ENSMMUG00000022387 I
ENSMICG00000017901 Microcebus murinus ENSMICG00000017901 I
GZF1 Monodelphis domestica ENSMODG00000006238 I
GZF1 Otolemur garnettii ENSOGAG00000028389 I
ENSPSIG00000014455 Pelodiscus sinensis ENSPSIG00000014455 I
ENSPPYG00000010766 Pongo abelii ENSPPYG00000010766 I
GZF1 Sorex araneus ENSSARG00000010285 I
GZF1 Tursiops truncatus ENSTTRG00000011345 I