TCM_003125 (Theobroma cacao)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 TCM_003125 T045337_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PIF1
M01703_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8733 		0.911 0.920
PIF1
M08404_2.00 		Arabidopsis thaliana
NCACGTGWSNYNHH
DDNRNSWCACGTGN		 ChIP-chip
Mathelier et al.(2014)
MA0552.1 		0.911 0.920
PIF1
M09783_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PIF1_01 		0.911 0.920
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.871 0.940
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.871 0.940
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.871 0.940
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.871 0.940
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.871 0.940
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.871 0.940
PIF4
M08046_2.00 		Arabidopsis thaliana
CACGTGSV
BSCACGTG		 ChIP-seq
Mathelier et al.(2014)
MA0561.1 		0.868 0.860
PIF5
M08047_2.00 		Arabidopsis thaliana
YCACRTGS
SCAYGTGR		 ChIP-seq
Mathelier et al.(2014)
MA0562.1 		0.855 0.840
PIF5
M09452_2.00 		Arabidopsis thaliana
NNBCAYGTGV
BCACRTGVNN		 Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062 		0.855 0.840
SPT
M01709_2.00 		Arabidopsis thaliana
NCACGTGSN
NSCACGTGN		 PBM
Weirauch et al.(2014)
pTH8111 		0.847 0.840
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.842 0.600
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.842 0.560
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX94040 bHLH 343 392
EOX94041 bHLH 343 392
EOX94042 bHLH 320 369

Links

Other bHLH family TFs
Other Theobroma cacao TFs

470 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g09805 Acanthocheilonema viteae nAv.1.0.1.g09805 N 0.000
ANCCAN_21638 Ancylostoma caninum ANCCAN_21638 I 0.000
ANCCAN_21637 Ancylostoma caninum ANCCAN_21637 N 0.000
ANCCAN_19939 Ancylostoma caninum ANCCAN_19939 N 0.000
ANCCAN_17708 Ancylostoma caninum ANCCAN_17708 I 0.000
ANCCAN_12424 Ancylostoma caninum ANCCAN_12424 I 0.000
ANCCAN_08230 Ancylostoma caninum ANCCAN_08230 I 0.000
ANCCEY_10464 Ancylostoma ceylanicum ANCCEY_10464 N 0.000
ANCDUO_11855 Ancylostoma duodenale ANCDUO_11855 N 0.000
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N 0.000
ANCDUO_26276 Ancylostoma duodenale ANCDUO_26276 N 0.000
ANCDUO_24920 Ancylostoma duodenale ANCDUO_24920 I 0.000
ANCDUO_24269 Ancylostoma duodenale ANCDUO_24269 N 0.000
ANCDUO_11856 Ancylostoma duodenale ANCDUO_11856 I 0.000
ACAC_0000798501 Angiostrongylus cantonensis ACAC_0000798501 N 0.000
ACAC_0000857301 Angiostrongylus cantonensis ACAC_0000857301 N 0.000
ACOC_0000653601 Angiostrongylus costaricensis ACOC_0000653601 N 0.000
ACOC_0001190001 Angiostrongylus costaricensis ACOC_0001190001 N 0.000
ASIM_0000156001 Anisakis simplex ASIM_0000156001 N 0.000
ALUE_0000448701 Ascaris lumbricoides ALUE_0000448701 N 0.000
ALUE_0000605501 Ascaris lumbricoides ALUE_0000605501 N 0.000
ASU_05752 Ascaris suum ASU_05752 N 0.000
ASU_07820 Ascaris suum ASU_07820 N 0.000
Bm6643 Brugia malayi Bm6643 N 0.000
CBG20663 Caenorhabditis briggsae CBG20663 N 0.000
DICVIV_01337 Dictyocaulus viviparus DICVIV_01337 N 0.000
nDi.2.2.2.g04713 Dirofilaria immitis nDi.2.2.2.g04713 N 0.000
DME_0000590001 Dracunculus medinensis DME_0000590001 N 0.000
EEL_0000629001 Elaeophora elaphi EEL_0000629001 N 0.000
EVEC_0000171701 Enterobius vermicularis EVEC_0000171701 N 0.000
GPUH_0000029001 Gongylonema pulchrum GPUH_0000029001 N 0.000
HCOI02106600 Haemonchus contortus HCOI02106600 N 0.000
HCOI00417600 Haemonchus contortus HCOI00417600 N 0.000
HCOI01420700 Haemonchus contortus HCOI01420700 N 0.000
HPLM_0000803901 Haemonchus placei HPLM_0000803901 N 0.000
HPBE_0002408301 Heligmosomoides bakeri HPBE_0002408301 I 0.000
HPBE_0002310801 Heligmosomoides bakeri HPBE_0002310801 N 0.000
HPBE_0001796801 Heligmosomoides bakeri HPBE_0001796801 N 0.000
HPBE_0000066401 Heligmosomoides bakeri HPBE_0000066401 N 0.000
nLs.2.1.2.g02941 Litomosoides sigmodontis nLs.2.1.2.g02941 N 0.000
LOAG_14354 Loa loa LOAG_14354 N 0.000
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.000
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.000
Minc03634 Meloidogyne incognita Minc03634 N 0.000
Minc04648 Meloidogyne incognita Minc04648 N 0.000
mgf006762m Mimulus guttatus mgf006762m N 0.000
NECAME_16525 Necator americanus NECAME_16525 N 0.000
NECAME_10840 Necator americanus NECAME_10840 N 0.000
NEMVEDRAFT_v1g59568 Nematostella vectensis NEMVEDRAFT_v1g59568 N 0.000
NBR_0001132501 Nippostrongylus brasiliensis NBR_0001132501 N 0.000
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.000
OESDEN_18796 Oesophagostomum dentatum OESDEN_18796 N 0.000
OFLC_0000496201 Onchocerca flexuosa OFLC_0000496201 N 0.000
nOo.2.0.1.g01970 Onchocerca ochengi nOo.2.0.1.g01970 N 0.000
WBGene00237022 Onchocerca volvulus WBGene00237022 N 0.000
PTRK_0001161700 Parastrongyloides trichosuri PTRK_0001161700 N 0.000
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N 0.000
scaffold593-EXSNAP2012.5 Pristionchus exspectatus scaffold593-EXSNAP2012.5 N 0.000
scaffold1425-EXSNAP2012.3 Pristionchus exspectatus scaffold1425-EXSNAP2012.3 N 0.000
scaffold113-EXSNAP2012.49 Pristionchus exspectatus scaffold113-EXSNAP2012.49 N 0.000
Ppa-hmg-1.1 Pristionchus pacificus PPA22767 N 0.000
PPA12247 Pristionchus pacificus PPA12247 N 0.000
PPA06513 Pristionchus pacificus PPA06513 N 0.000
RSKR_0000269200 Rhabditophanes kr3021 RSKR_0000269200 N 0.000
RSKR_0000128800 Rhabditophanes kr3021 RSKR_0000128800 N 0.000
Sakowv30021656m.g Saccoglossus kowalevskii Sakowv30021656m.g N 0.000
L596_g8199 Steinernema carpocapsae L596_g8199 N 0.000
L889_g29516 Steinernema feltiae L889_g29516 N 0.000
L892_g2503 Steinernema scapterisci L892_g2503 N 0.000
SPAL_0001085700 Strongyloides papillosus SPAL_0001085700 N 0.000
SSTP_0000585600 Strongyloides stercoralis SSTP_0000585600 N 0.000
SVE_0954900 Strongyloides venezuelensis SVE_0954900 N 0.000
SVUK_0001398701 Strongylus vulgaris SVUK_0001398701 N 0.000
SVUK_0001721701 Strongylus vulgaris SVUK_0001721701 N 0.000
SMUV_0000634201 Syphacia muris SMUV_0000634201 N 0.000
TELCIR_05217 Teladorsagia circumcincta TELCIR_05217 N 0.000
TELCIR_22690 Teladorsagia circumcincta TELCIR_22690 N 0.000
TCM_014800 Theobroma cacao TCM_014800 N 0.000
EFV62220 Trichinella spiralis EFV62220 N 0.000
WUBG_02390 Wuchereria bancrofti WUBG_02390 N 0.000