Alligator_sinensis_CCG021907.1 (Alligator sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Alligator_sinensis_CCG021907.1 T046690_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Bhlhe40
M00119_2.00 		Mus musculus
DCACGTGMN
NKCACGTGH		 PBM
Badis et al.(2009)
Bhlhb2_1274 		0.914 1.000
Bhlhe40
M01738_2.00 		Mus musculus
NCACRNBN
NVNYGTGN		 PBM
Weirauch et al.(2014)
pTH4330 		0.914 1.000
BHLHE40
M02788_2.00 		Homo sapiens
NKCACGTGMH
DKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB2_1 		0.914 1.000
Bhlhe40
M02817_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_1 		0.914 1.000
Bhlhe40
M02818_2.00 		Mus musculus
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
Bhlhb2_2 		0.914 1.000
BHLHE40
M04126_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_HT-SELEX 		0.914 1.000
BHLHE40
M07798_2.00 		Homo sapiens
DCACGTGMSN
NSKCACGTGH		 ChIP-seq
Gerstein et al.(2012)
HepG2_BHLHE40_HudsonAlpha 		0.914 1.000
BHLHE40
M08726_2.00 		Homo sapiens
DDCACGTGMS
SKCACGTGHH		 Misc
Kulakovskiy et al.(2013)
BHE40_HUMAN.H11MO.0.A 		0.914 1.000
Bhlhe40
M08761_2.00 		Mus musculus
DCACGTGMS
SKCACGTGH		 Misc
Kulakovskiy et al.(2013)
BHE40_MOUSE.H11MO.0.A 		0.914 1.000
BHLHE40
M09456_2.00 		Homo sapiens
DCACGTGMNN
NNKCACGTGH		 Misc
Heinz et al.(2010)
HepG2-BHLHE40_GSE31477 		0.914 1.000
BHLHE40
M09842_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BHLHE40_03 		0.914 1.000
BHLHE40
M09843_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q2 		0.914 1.000
BHLHE40
M09844_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC1_Q3 		0.914 1.000
BHLHE40
M09845_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STRA13_01 		0.914 1.000
BHLHE40
M04127_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE40_eDBD_Methyl-HT-SELEX 		0.914 1.000
Bhlhe41
M01739_2.00 		Mus musculus
NMNCGTGMN
NKCACGNKN		 PBM
Weirauch et al.(2014)
pTH5060 		0.914 0.981
BHLHE41
M02782_2.00 		Homo sapiens
NKCACGTGMN
NKCACGTGMN		 SELEX
Jolma et al.(2013)
BHLHB3_1 		0.914 0.981
BHLHE41
M02783_2.00 		Homo sapiens
RKCACGTGAY
RTCACGTGMY		 SELEX
Jolma et al.(2013)
BHLHE41_1 		0.914 0.981
BHLHE41
M04106_2.00 		Homo sapiens
VTCACGTGAB
VTCACGTGAB		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_HT-SELEX 		0.914 0.981
BHLHE41
M09833_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q2 		0.914 0.981
BHLHE41
M09834_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DEC2_Q3 		0.914 0.981
BHLHE41
M04107_2.00 		Homo sapiens
RTCACGTGAY
RTCACGTGAY		 SELEX
Yin et al.(2017)
BHLHE41_eDBD_Methyl-HT-SELEX 		0.914 0.981
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG021907.1 bHLH 22 76

Links

Other bHLH family TFs
Other Alligator sinensis TFs

117 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSBTAP00000050946-D1 Bos grunniens ENSBTAP00000050946-D1 I
MTERF1 Bos taurus ENSBTAG00000045617 I
MTERF1 Callithrix jacchus ENSCJAG00000014169 I
MTERF1 Canis familiaris ENSCAFG00000001908 I
MTERF1 Cavia porcellus ENSCPOG00000003510 I
ENSCSAG00000012508 Chlorocebus sabaeus ENSCSAG00000012508 I
MTERF1 Erinaceus europaeus ENSEEUG00000013448 I
MTERF1 Felis catus ENSFCAG00000030885 I
MTERF1 Gorilla gorilla ENSGGOG00000025995 I
MTERF1 Homo sapiens ENSG00000127989 D
ENSSTOG00000001846 Ictidomys tridecemlineatus ENSSTOG00000001846 I
MTERF1 Loxodonta africana ENSLAFG00000000054 I
ENSP00000248643 Macaca fascicularis ENSP00000248643 I
MTERF1 Macaca mulatta ENSMMUG00000015516 I
ENSMPUG00000008568 Mustela putorius furo ENSMPUG00000008568 I
Mterf1a Mus musculus ENSMUSG00000040429 I
Mterf1b Mus musculus ENSMUSG00000053178 I
Myotis_brandtii_MTERF_10033812 Myotis brandtii Myotis_brandtii_MTERF_10033812 I
MTERF1 Myotis lucifugus ENSMLUG00000011330 I
ENSNLEG00000015192 Nomascus leucogenys ENSNLEG00000015192 I
MTERF1 Oryctolagus cuniculus ENSOCUG00000010902 I
MTERF1 Otolemur garnettii ENSOGAG00000001378 I
ENSOARG00000016682 Ovis aries ENSOARG00000016682 I
MTERF1 Pan troglodytes ENSPTRG00000019388 I
ENSPANG00000007445 Papio anubis ENSPANG00000007445 I
ENSPPYG00000017826 Pongo abelii ENSPPYG00000017826 I
Mterf1 Rattus norvegicus ENSRNOG00000007899 I
MTERF1 Sus scrofa ENSSSCG00000015309 I
ENSTSYG00000012629 Tarsius syrichta ENSTSYG00000012629 I
MTERF1 Tupaia belangeri ENSTBEG00000005760 I
MTERF1 Tursiops truncatus ENSTTRG00000010321 I
MTERF1 Vicugna pacos ENSVPAG00000005202 I