Cla006394 (Citrullus lanatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cla006394 T046944_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42280
M06733_2.00 		Arabidopsis thaliana
DNCMACTTGYH
DRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH130_col_a 		0.879 0.941
BHLH122
M06724_2.00 		Arabidopsis thaliana
NNDNCMACTTGNNH
DNNCAAGTKGNHNN		 Dap-seq
OMalley et al.(2016)
bHLH122_col100_a 		0.856 0.902
BHLH122
M06725_2.00 		Arabidopsis thaliana
DNCMACTTGYN
NRCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a 		0.856 0.902
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla006394 bHLH 362 412

Links

Other bHLH family TFs
Other Citrullus lanatus TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00106p00065610 Amborella trichopoda AMTR_s00106p00065610 N
Aquca_072_00078 Aquilegia coerulea Aquca_072_00078 N
Aquca_035_00057 Aquilegia coerulea Aquca_035_00057 I
scaffold_600421.1 Arabidopsis lyrata scaffold_600421.1 I
AT5G04760 Arabidopsis thaliana AT5G04760 D
Bostr.13129s0486 Boechera stricta Bostr.13129s0486 I
Bo2g006670 Brassica oleracea Bo2g006670 I
Bo3g002960 Brassica oleracea Bo3g002960 I
Bo9g178980 Brassica oleracea Bo9g178980 I
Bra005818 Brassica rapa Bra005818 I
Bra009432 Brassica rapa Bra009432 I
Bra028780 Brassica rapa Bra028780 I
PK13672.1 Cannabis sativa PK13672.1 I
Cagra.5249s0014 Capsella grandiflora Cagra.5249s0014 I
Carubv10003623m.g Capsella rubella Carubv10003623m.g I
evm.TU.supercontig_138.5 Carica papaya evm.TU.supercontig_138.5 I
Ca_15603 Cicer arietinum Ca_15603 I
Ca_05454 Cicer arietinum Ca_05454 I
Ca_19000 Cicer arietinum Ca_19000 I
Cla013899 Citrullus lanatus Cla013899 N
Cla009230 Citrullus lanatus Cla009230 I
Cla020348 Citrullus lanatus Cla020348 I
Cla014242 Citrullus lanatus Cla014242 N
Ciclev10032259m.g Citrus clementina Ciclev10032259m.g I
Ciclev10029205m.g Citrus clementina Ciclev10029205m.g N
Ciclev10016071m.g Citrus clementina Ciclev10016071m.g I
orange1.1g022439m.g Citrus sinensis orange1.1g022439m.g I
orange1.1g026855m.g Citrus sinensis orange1.1g026855m.g N
Cucsa.364590 Cucumis sativus Cucsa.364590 N
Cucsa.280970 Cucumis sativus Cucsa.280970 I
Cucsa.013870 Cucumis sativus Cucsa.013870 I
Eucgr.G02591 Eucalyptus grandis Eucgr.G02591 I
gene23544-v1.0-hybrid Fragaria vesca gene23544-v1.0-hybrid I
GLYMA08G40020 Glycine max GLYMA08G40020 I
GLYMA18G18140 Glycine max GLYMA18G18140 I
GLYMA10G42450 Glycine max GLYMA10G42450 I
GLYMA07G28310 Glycine max GLYMA07G28310 I
GLYMA20G24600 Glycine max GLYMA20G24600 I
GLYMA20G01450 Glycine max GLYMA20G01450 I
Gorai.005G212900 Gossypium raimondii Gorai.005G212900 I
Gorai.013G067600 Gossypium raimondii Gorai.013G067600 I
Gorai.012G135600 Gossypium raimondii Gorai.012G135600 I
Gorai.008G147400 Gossypium raimondii Gorai.008G147400 I
Gorai.006G118200 Gossypium raimondii Gorai.006G118200 I
Lus10041088.g Linum usitatissimum Lus10041088.g N
MDP0000610242 Malus domestica MDP0000610242 N
MDP0000289018 Malus domestica MDP0000289018 I
cassava18614.valid.m1 Manihot esculenta cassava18614.valid.m1 I
cassava44314.m1 Manihot esculenta cassava44314.m1 N
MTR_1g111830 Medicago truncatula MTR_1g111830 I
mgf009460m Mimulus guttatus mgf009460m I
mgf016380m Mimulus guttatus mgf016380m N
GSMUA_Achr9G23760_001 Musa acuminata GSMUA_Achr9G23760_001 I
GSMUA_Achr9G20620_001 Musa acuminata GSMUA_Achr9G20620_001 I
GSMUA_Achr8G02260_001 Musa acuminata GSMUA_Achr8G02260_001 N
GSMUA_Achr1G17730_001 Musa acuminata GSMUA_Achr1G17730_001 I
GSMUA_Achr11G09110_001 Musa acuminata GSMUA_Achr11G09110_001 N
POPTR_0010s24710 Populus trichocarpa POPTR_0010s24710 I
Pm006046 Prunus mume Pm006046 I
PRUPE_ppa009396mg Prunus persica PRUPE_ppa009396mg I
PRUPE_ppa010926mg Prunus persica PRUPE_ppa010926mg I
30131.m007263 Ricinus communis 30131.m007263 I
30055.m001589 Ricinus communis 30055.m001589 I
SapurV1A.0036s0350 Salix purpurea SapurV1A.0036s0350 I
SapurV1A.0234s0050 Salix purpurea SapurV1A.0234s0050 I
SapurV1A.0450s0110 Salix purpurea SapurV1A.0450s0110 I
SapurV1A.1671s0040 Salix purpurea SapurV1A.1671s0040 I
Si022762m.g Setaria italica Si022762m.g N
Solyc11g006720.1 Solanum lycopersicum Solyc11g006720.1 N
PGSC0003DMG400007603 Solanum tuberosum PGSC0003DMG400007603 N
TCM_007672 Theobroma cacao TCM_007672 I
TCM_041160 Theobroma cacao TCM_041160 I
TCM_041362 Theobroma cacao TCM_041362 N
VIT_06s0080g00790 Vitis vinifera VIT_06s0080g00790 I
VIT_10s0071g00660 Vitis vinifera VIT_10s0071g00660 I