Gfo_R009231 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R009231 T047336_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TAL1
M08734_2.00 		Homo sapiens
BSTTATCWSNNNNNNVCVV
BBGBNNNNNNSWGATAASV		 Misc
Kulakovskiy et al.(2013)
TAL1_HUMAN.H11MO.0.A 		0.914 1.000
Tal1
M08759_2.00 		Mus musculus
BYKBNNNNNNVWGATAAVVN
NBBTTATCWBNNNNNNVMRV		 Misc
Kulakovskiy et al.(2013)
TAL1_MOUSE.H11MO.0.A 		0.914 1.000
Tal1
M09471_2.00 		Mus musculus
NVCWKMWG
CWKMWGBN		 Misc
Heinz et al.(2010)
HPC7-Scl_GSE13511 		0.914 1.000
Tal1
M09472_2.00 		Mus musculus
YTATCWSNNNNNNVCAGVHN
NDBCTGBNNNNNNSWGATAR		 Misc
Heinz et al.(2010)
Ter119-SCL_GSE18720 		0.914 1.000
TAL1
M09870_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TAL1_01 		0.914 1.000
TAL1
M09871_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TAL1_Q6_01 		0.914 1.000
TAL1
M09872_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TAL1_Q6 		0.914 1.000
LYL1
M08714_2.00 		Homo sapiens
VNRRNVVCAGMWGN
NCWKCTGBBNYYNB		 Misc
Kulakovskiy et al.(2013)
LYL1_HUMAN.H11MO.0.A 		0.888 0.885
Lyl1
M08763_2.00 		Mus musculus
VNRRNVVCAGMWGN
NCWKCTGBBNYYNB		 Misc
Kulakovskiy et al.(2013)
LYL1_MOUSE.H11MO.0.A 		0.853 0.865
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R009231 bHLH 3 55

Links

Other bHLH family TFs
Other Geospiza fortis TFs

224 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_038_00045 Aquilegia coerulea Aquca_038_00045 N 0.000
scaffold_200168.1 Arabidopsis lyrata scaffold_200168.1 N 0.000
AT1G63490 Arabidopsis thaliana AT1G63490 N 0.000
Bo9g029100 Brassica oleracea Bo9g029100 N 0.000
PK05702.1 Cannabis sativa PK05702.1 N 0.000
Cagra.2104s0024 Capsella grandiflora Cagra.2104s0024 N 0.000
Cla011637 Citrullus lanatus Cla011637 N 0.000
orange1.1g000212m.g Citrus sinensis orange1.1g000212m.g N 0.000
Eucgr.D01851 Eucalyptus grandis Eucgr.D01851 N 0.000
Thhalv10023217m.g Eutrema salsugineum Thhalv10023217m.g N 0.000
GLYMA11G02580 Glycine max GLYMA11G02580 N 0.000
GLYMA01G42890 Glycine max GLYMA01G42890 N 0.000
Gorai.004G211700 Gossypium raimondii Gorai.004G211700 N 0.000
LPERR06G23820 Leersia perrieri LPERR06G23820 N 0.000
Lus10008495.g Linum usitatissimum Lus10008495.g N 0.000
chr2.CM0304.950.nc Lotus japonicus chr2.CM0304.950.nc N 0.000
cassava14944.m1 Manihot esculenta cassava14944.m1 N 0.000
MTR_5g010300 Medicago truncatula MTR_5g010300 N 0.000
mgf018831m Mimulus guttatus mgf018831m N 0.000
OBART06G28370 Oryza barthii OBART06G28370 N 0.000
OB06G36110 Oryza brachyantha OB06G36110 N 0.000
ORGLA06G0289500 Oryza glaberrima ORGLA06G0289500 N 0.000
OGLUM06G29760 Oryza glumaepatula OGLUM06G29760 N 0.000
BGIOSGA020494 Oryza indica BGIOSGA020494 N 0.000
OLONG_013925 Oryza longistaminata OLONG_013925 N 0.000
OMERI06G28260 Oryza meridionalis OMERI06G28260 N 0.000
ONIVA06G31490 Oryza nivara ONIVA06G31490 N 0.000
OPUNC06G25880 Oryza punctata OPUNC06G25880 N 0.000
ORUFI06G30290 Oryza rufipogon ORUFI06G30290 N 0.000
OS06G0731600 Oryza sativa OS06G0731600 N 0.000
Pavir.Ib01650 Panicum virgatum Pavir.Ib01650 N 0.000
PDK_20s1401711g002 Phoenix dactylifera PDK_20s1401711g002 N 0.000
30190.m011218 Ricinus communis 30190.m011218 N 0.000
Si005667m.g Setaria italica Si005667m.g N 0.000
Solyc08g081000.2 Solanum lycopersicum Solyc08g081000.2 N 0.000
Sb10g031260 Sorghum bicolor Sb10g031260 N 0.000
TCM_016246 Theobroma cacao TCM_016246 N 0.000
GRMZM2G466292 Zea mays GRMZM2G466292 N 0.000