fgenesh2_pg.scaffold_226000032 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 fgenesh2_pg.scaffold_226000032 T048582_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nau
M03600_2.00 		Drosophila melanogaster
DBAACAGCTGTYVH
DBRACAGCTGTTVH		 SELEX
Nitta et al.(2015)
nau_1 		0.884 0.923
nau
M03601_2.00 		Drosophila melanogaster
NBRACAGCTGACRC
GYGTCAGCTGTYVN		 SELEX
Nitta et al.(2015)
nau_2 		0.884 0.923
nau
M03602_2.00 		Drosophila melanogaster
RCGWCAGCTGWCGC
GCGWCAGCTGWCGY		 SELEX
Nitta et al.(2015)
nau_3 		0.884 0.923
nau
M05949_2.00 		Drosophila melanogaster
CACCTGYY
RRCAGGTG		 B1H
Zhu et al.(2011)
nau_da_SANGER_5_FBgn0002922 		0.884 0.923
nau
M05950_2.00 		Drosophila melanogaster
RACASCTGACGC
GCGTCAGSTGTY		 B1H
Zhu et al.(2011)
nau_SANGER_5_FBgn0002922 		0.884 0.923
Myf5
M09463_2.00 		Mus musculus
NRRCAGCTGY
RCAGCTGYYN		 Misc
Heinz et al.(2010)
GM-Myf5_GSE24852 		0.846 0.865
MYF5
M09821_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$MYF5_Q6 		0.846 0.865
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_226000032 bHLH 80 131

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

140 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I
AMTR_s00046p00066610 Amborella trichopoda AMTR_s00046p00066610 I
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I
Aquca_007_00702 Aquilegia coerulea Aquca_007_00702 I
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I
Aquca_035_00175 Aquilegia coerulea Aquca_035_00175 I
SPT Arabidopsis lyrata fgenesh1_pg.C_scaffold_7000292 I
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I
BIM1 Arabidopsis lyrata scaffold_600819.1 I
UNE10 Arabidopsis lyrata scaffold_604304.1 I
BIM2 Arabidopsis thaliana AT1G69010 D
UNE10 Arabidopsis thaliana AT4G00050 D
SPT Arabidopsis thaliana AT4G36930 D
BIM1 Arabidopsis thaliana AT5G08130 D
ALC Arabidopsis thaliana AT5G67110 I
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I
Bostr.14547s0014 Boechera stricta Bostr.14547s0014 I
Bostr.7867s1578 Boechera stricta Bostr.7867s1578 I
BRADI1G48400 Brachypodium distachyon BRADI1G48400 I
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I
BRADI3G46200 Brachypodium distachyon BRADI3G46200 I
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I
Bo1g004970 Brassica oleracea Bo1g004970 I
Bo2g062560 Brassica oleracea Bo2g062560 I
Bo2g161110 Brassica oleracea Bo2g161110 I
Bo3g004690 Brassica oleracea Bo3g004690 I
Bo3g042120 Brassica oleracea Bo3g042120 I
Bo3g054850 Brassica oleracea Bo3g054850 I
Bo3g153630 Brassica oleracea Bo3g153630 I
Bo5g020460 Brassica oleracea Bo5g020460 I
Bo6g108530 Brassica oleracea Bo6g108530 I
Bo9g174770 Brassica oleracea Bo9g174770 I
Bra000560 Brassica rapa Bra000560 I
Bra004355 Brassica rapa Bra004355 I
Bra005969 Brassica rapa Bra005969 I
Bra009322 Brassica rapa Bra009322 I
Bra010591 Brassica rapa Bra010591 I
Bra011740 Brassica rapa Bra011740 I
Bra012133 Brassica rapa Bra012133 I
Bra029354 Brassica rapa Bra029354 I
Bra037312 Brassica rapa Bra037312 I
Bra038332 Brassica rapa Bra038332 I
PK00238.1 Cannabis sativa PK00238.1 I
PK01364.1 Cannabis sativa PK01364.1 I
PK08539.1 Cannabis sativa PK08539.1 I
PK10562.1 Cannabis sativa PK10562.1 I
PK20816.1 Cannabis sativa PK20816.1 I
PK27964.1 Cannabis sativa PK27964.1 I
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I
Cagra.20893s0010 Capsella grandiflora Cagra.20893s0010 I
Cagra.4909s0047 Capsella grandiflora Cagra.4909s0047 I
Carubv10000655m.g Capsella rubella Carubv10000655m.g I
Carubv10001567m.g Capsella rubella Carubv10001567m.g I
Carubv10005083m.g Capsella rubella Carubv10005083m.g I
Carubv10020679m.g Capsella rubella Carubv10020679m.g I
Carubv10028570m.g Capsella rubella Carubv10028570m.g I
evm.TU.supercontig_21.176 Carica papaya evm.TU.supercontig_21.176 I
evm.TU.supercontig_212.3 Carica papaya evm.TU.supercontig_212.3 I
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I
Ca_02162 Cicer arietinum Ca_02162 I
Ca_19269 Cicer arietinum Ca_19269 I
Ca_22043 Cicer arietinum Ca_22043 I
Ca_22883 Cicer arietinum Ca_22883 I
Cla000718 Citrullus lanatus Cla000718 I
Cla018818 Citrullus lanatus Cla018818 I
Cla022382 Citrullus lanatus Cla022382 I
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I
Ciclev10019786m.g Citrus clementina Ciclev10019786m.g I
Ciclev10020053m.g Citrus clementina Ciclev10020053m.g I
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I
Ciclev10025735m.g Citrus clementina Ciclev10025735m.g I
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I
orange1.1g012387m.g Citrus sinensis orange1.1g012387m.g I
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I
orange1.1g022782m.g Citrus sinensis orange1.1g022782m.g I
orange1.1g036669m.g Citrus sinensis orange1.1g036669m.g I
orange1.1g038097m.g Citrus sinensis orange1.1g038097m.g I
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I
Cucsa.102530 Cucumis sativus Cucsa.102530 I
Cucsa.113490 Cucumis sativus Cucsa.113490 I
Cucsa.174600 Cucumis sativus Cucsa.174600 I
Cucsa.198520 Cucumis sativus Cucsa.198520 I
Cucsa.328060 Cucumis sativus Cucsa.328060 I
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I
Eucgr.D02499 Eucalyptus grandis Eucgr.D02499 I
Eucgr.H02385 Eucalyptus grandis Eucgr.H02385 I
Eucgr.I00906 Eucalyptus grandis Eucgr.I00906 I
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I
Thhalv10025554m.g Eutrema salsugineum Thhalv10025554m.g I
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I
Thhalv10028687m.g Eutrema salsugineum Thhalv10028687m.g I
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I
gene23819-v1.0-hybrid Fragaria vesca gene23819-v1.0-hybrid I
gene25546-v1.0-hybrid Fragaria vesca gene25546-v1.0-hybrid I
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I
GLYMA01G09010 Glycine max GLYMA01G09010 I
GLYMA01G15930 Glycine max GLYMA01G15930 I
GLYMA01G32890 Glycine max GLYMA01G32890 I
GLYMA01G39451 Glycine max GLYMA01G39451 I
GLYMA02G13670 Glycine max GLYMA02G13670 I
GLYMA03G04000 Glycine max GLYMA03G04000 I
GLYMA05G07490 Glycine max GLYMA05G07490 I
GLYMA08G28010 Glycine max GLYMA08G28010 I
GLYMA11G17120 Glycine max GLYMA11G17120 I
GLYMA14G09231 Glycine max GLYMA14G09231 I
GLYMA17G08980 Glycine max GLYMA17G08980 I
GLYMA17G35951 Glycine max GLYMA17G35951 I
GLYMA18G51080 Glycine max GLYMA18G51080 I
Gorai.001G017900 Gossypium raimondii Gorai.001G017900 I
Gorai.001G148300 Gossypium raimondii Gorai.001G148300 I
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I
Gorai.007G088300 Gossypium raimondii Gorai.007G088300 I
Gorai.007G118100 Gossypium raimondii Gorai.007G118100 I
Gorai.007G214800 Gossypium raimondii Gorai.007G214800 I
Gorai.008G077300 Gossypium raimondii Gorai.008G077300 I
Gorai.008G106900 Gossypium raimondii Gorai.008G106900 I
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I
Gorai.009G213800 Gossypium raimondii Gorai.009G213800 I
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I
MLOC_62335 Hordeum vulgare MLOC_62335 I
MLOC_65463 Hordeum vulgare MLOC_65463 I
LPERR04G17400 Leersia perrieri LPERR04G17400 I
LPERR06G03910 Leersia perrieri LPERR06G03910 I
LPERR06G05570 Leersia perrieri LPERR06G05570 I
Lus10004630.g Linum usitatissimum Lus10004630.g I
Lus10024811.g Linum usitatissimum Lus10024811.g I
Lus10026684.g Linum usitatissimum Lus10026684.g I
Lus10034358.g Linum usitatissimum Lus10034358.g I
Lus10041592.g Linum usitatissimum Lus10041592.g I
LjT43O20.130.nd Lotus japonicus LjT43O20.130.nd I
MDP0000215587 Malus domestica MDP0000215587 I
MDP0000261293 Malus domestica MDP0000261293 I
MDP0000439540 Malus domestica MDP0000439540 I
MDP0000523812 Malus domestica MDP0000523812 I
cassava10497.m1 Manihot esculenta cassava10497.m1 I
cassava13956.valid.m1 Manihot esculenta cassava13956.valid.m1 I
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I
cassava19894.m1 Manihot esculenta cassava19894.m1 I
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I
cassava35035.m1 Manihot esculenta cassava35035.m1 I
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I
cassava44831.m1 Manihot esculenta cassava44831.m1 I
cassava47359.m1 Manihot esculenta cassava47359.m1 I
cassava9239.m1 Manihot esculenta cassava9239.m1 I
MTR_1g019240 Medicago truncatula MTR_1g019240 I
MTR_4g110040 Medicago truncatula MTR_4g110040 I
MTR_5g017040 Medicago truncatula MTR_5g017040 I
MTR_5g048350 Medicago truncatula MTR_5g048350 I
MTR_7g017320 Medicago truncatula MTR_7g017320 I
mg025182m Mimulus guttatus mg025182m I
mgf000445m Mimulus guttatus mgf000445m I
mgf001137m Mimulus guttatus mgf001137m I
mgf005431m Mimulus guttatus mgf005431m I
mgf005849m Mimulus guttatus mgf005849m I
mgf011829m Mimulus guttatus mgf011829m I
mgf013208m Mimulus guttatus mgf013208m I
GSMUA_Achr10G09040_001 Musa acuminata GSMUA_Achr10G09040_001 I
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I
GSMUA_Achr7G20810_001 Musa acuminata GSMUA_Achr7G20810_001 I
GSMUA_Achr8G15670_001 Musa acuminata GSMUA_Achr8G15670_001 I
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I
OBART06G04330 Oryza barthii OBART06G04330 I
OBART06G06000 Oryza barthii OBART06G06000 I
OB08G25940 Oryza brachyantha OB08G25940 I
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I
BGIOSGA021743 Oryza indica BGIOSGA021743 I
BGIOSGA022375 Oryza indica BGIOSGA022375 I
BGIOSGA028888 Oryza indica BGIOSGA028888 I
OLONG_003583 Oryza longistaminata OLONG_003583 I
OLONG_013313 Oryza longistaminata OLONG_013313 I
OMERI06G05430 Oryza meridionalis OMERI06G05430 I
OMERI06G07190 Oryza meridionalis OMERI06G07190 I
ONIVA06G05510 Oryza nivara ONIVA06G05510 I
ONIVA06G06960 Oryza nivara ONIVA06G06960 I
ONIVA08G20800 Oryza nivara ONIVA08G20800 I
OPUNC06G05770 Oryza punctata OPUNC06G05770 I
OPUNC08G16820 Oryza punctata OPUNC08G16820 I
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I
OS06G0193400 Oryza sativa OS06G0193400 I
OS08G0490000 Oryza sativa OS08G0490000 I
Pavir.Db01966 Panicum virgatum Pavir.Db01966 I
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I
Pavir.J15280 Panicum virgatum Pavir.J15280 I
Pavir.J15575 Panicum virgatum Pavir.J15575 I
Pavir.J38250 Panicum virgatum Pavir.J38250 I
Pavir.J38910 Panicum virgatum Pavir.J38910 I
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I
POPTR_0002s14430 Populus trichocarpa POPTR_0002s14430 I
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I
POPTR_0005s18280 Populus trichocarpa POPTR_0005s18280 I
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I
POPTR_0014s02590 Populus trichocarpa POPTR_0014s02590 I
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I
Pm026389 Prunus mume Pm026389 I
Pm027004 Prunus mume Pm027004 I
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I
PRUPE_ppa005629mg Prunus persica PRUPE_ppa005629mg I
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I
PRUPE_ppa014897mg Prunus persica PRUPE_ppa014897mg I
PRUPE_ppa017709mg Prunus persica PRUPE_ppa017709mg I
PRUPE_ppa021918mg Prunus persica PRUPE_ppa021918mg I
29739.m003684 Ricinus communis 29739.m003684 I
29790.m000843 Ricinus communis 29790.m000843 I
30115.m001235 Ricinus communis 30115.m001235 I
30138.m003899 Ricinus communis 30138.m003899 I
30138.m003913 Ricinus communis 30138.m003913 I
30170.m013852 Ricinus communis 30170.m013852 I
30174.m008814 Ricinus communis 30174.m008814 I
SapurV1A.0033s0400 Salix purpurea SapurV1A.0033s0400 I
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I
SapurV1A.0167s0140 Salix purpurea SapurV1A.0167s0140 I
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I
SapurV1A.0321s0050 Salix purpurea SapurV1A.0321s0050 I
SapurV1A.0423s0130 Salix purpurea SapurV1A.0423s0130 I
SapurV1A.0603s0060 Salix purpurea SapurV1A.0603s0060 I
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I
Si000845m.g Setaria italica Si000845m.g I
Si006332m.g Setaria italica Si006332m.g I
Si012401m.g Setaria italica Si012401m.g I
Si013622m.g Setaria italica Si013622m.g I
Solyc01g090790.2 Solanum lycopersicum Solyc01g090790.2 I
Solyc02g093280.2 Solanum lycopersicum Solyc02g093280.2 I
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I
Solyc04g078690.2 Solanum lycopersicum Solyc04g078690.2 I
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I
PGSC0003DMG400004011 Solanum tuberosum PGSC0003DMG400004011 I
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I
PGSC0003DMG400025976 Solanum tuberosum PGSC0003DMG400025976 I
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I
Sb06g025040 Sorghum bicolor Sb06g025040 I
Sb06g025060 Sorghum bicolor Sb06g025060 I
Sb07g028860 Sorghum bicolor Sb07g028860 I
Sb10g004500 Sorghum bicolor Sb10g004500 I
Sb10g006250 Sorghum bicolor Sb10g006250 I
TCM_000649 Theobroma cacao TCM_000649 I
TCM_004959 Theobroma cacao TCM_004959 I
TCM_005607 Theobroma cacao TCM_005607 I
TCM_011433 Theobroma cacao TCM_011433 I
TCM_014392 Theobroma cacao TCM_014392 I
TCM_019015 Theobroma cacao TCM_019015 I
TCM_033802 Theobroma cacao TCM_033802 I
TCM_037455 Theobroma cacao TCM_037455 I
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I
BIM2 Vitis vinifera VIT_01s0010g00540 I
VIT_07s0031g00450 Vitis vinifera VIT_07s0031g00450 I
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I
BIM3 Vitis vinifera VIT_14s0083g00930 I
UNE10 Vitis vinifera VIT_15s0021g02690 I
BIM1 Vitis vinifera VIT_17s0000g04790 I
VIT_18s0001g10270 Vitis vinifera VIT_18s0001g10270 I
GRMZM2G017349 Zea mays GRMZM2G017349 I
GRMZM2G024530 Zea mays GRMZM2G024530 I
GRMZM2G116785 Zea mays GRMZM2G116785 I
GRMZM2G172795 Zea mays GRMZM2G172795 I